RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA944406 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26835613 26835613 PRJNA944406_P_NODE_97461_length_243_cov_1.811765_g96502_i0 PRJNA944406 97461 243 1.811765 4.40258895 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67 8.5e-11   NR SPQ96630.1 37360 g96502 i0 60.7 1.51851851851852 61 21 74.1 2 192 13 60 118 SPQ96630.1 unnamed protein product [Plasmodiophora brassicae] diamond 369 67 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
26968721 26968721 PRJNA944406_P_NODE_54722_length_259_cov_1.268817_g53763_i0 PRJNA944406 54722 259 1.268817 3.28623603 root 1 Root_unresolved Root_unresolved 48.9 3.14e-4   NR CEO95672.1 37360 g53763 i0 72.7 0.764478764478765 33 9 38.2 0 258 160 204 236 CEO95672.1 hypothetical protein PBRA_009680 [Plasmodiophora brassicae] diamond 198 48.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28699305 28699305 PRJNA944406_P_NODE_47487_length_265_cov_2.213542_g46528_i0 PRJNA944406 47487 265 2.213542 5.8658863 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.49e-15   NR CEP03657.1 37360 g46528 i0 74 0.566037735849057 50 13 56.6 0 71 220 121 170 CEP03657.1 hypothetical protein PBRA_003264 [Plasmodiophora brassicae] diamond 150 80.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30151493 30151493 PRJNA944406_P_NODE_92992_length_244_cov_2.274854_g92033_i0 PRJNA944406 92992 244 2.274854 5.55064376 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67 1.01e-10   NR SPR01967.1 37360 g92033 i0 52.9 1.77049180327869 87 26 88.5 4 216 1 141 227 SPR01967.1 unnamed protein product [Plasmodiophora brassicae] diamond 432 67 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31068186 31068186 PRJNA944406_P_NODE_84375_length_246_cov_1.780347_g83416_i0 PRJNA944406 84375 246 1.780347 4.37965362 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0209   NR CEP00780.1 37360 g83416 i0 42.6 0.74390243902439 61 31 73.2 2 225 46 247 304 CEP00780.1 hypothetical protein PBRA_008092 [Plasmodiophora brassicae] diamond 183 43.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32459890 32459890 PRJNA944406_P_NODE_42499_length_270_cov_1.563452_g41540_i0 PRJNA944406 42499 270 1.563452 4.2213204 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 103 1.54e-23   NR CEP00412.1 37360 g41540 i0 57.3 0.988888888888889 89 37 97.8 1 268 5 158 246 CEP00412.1 hypothetical protein PBRA_001466 [Plasmodiophora brassicae] diamond 267 103 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;