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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA944406 · 32 ✖

analysis 1

  • diamond · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1259580 1259580 PRJNA944406_P_NODE_86701_length_246_cov_0.890173_g85742_i0 PRJNA944406 86701 246 0.890173 2.18982558 Chlamydiia 204429 Bacteria Bacteria 126 9.04e-32   NR KAF3363325.1 1910938 g85742 i0 69.6 4.80487804878049 79 24 96.3 0 246 10 136 214 KAF3363325.1 Uncharacterized protein PHSC3_000079 [Chlamydiales bacterium STE3] diamond 1182 126 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium STE3
26961870 26961870 PRJNA944406_P_NODE_40782_length_272_cov_1.246231_g39823_i0 PRJNA944406 40782 272 1.246231 3.38974832 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 93.2 6.6400000000000005e-21   NR MBX9923598.1 2047756 g39823 i0 53.4 3.91544117647059 88 39 97.1 1 267 4 158 243 MBX9923598.1 6-phosphogluconolactonase [Rhabdochlamydiaceae bacterium] diamond 1065 93.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
27057034 27057034 PRJNA944406_P_NODE_84942_length_246_cov_1.462428_g83983_i0 PRJNA944406 84942 246 1.462428 3.59757288 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 64.7 7.08e-10   NR MFI0434829.1 2052176 g83983 i0 50.7 0.865853658536585 71 35 86.6 0 229 17 680 750 MFI0434829.1 chromosome segregation protein SMC [Parachlamydiaceae bacterium] diamond 213 64.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27063679 27063679 PRJNA944406_P_NODE_21302_length_290_cov_1.981567_g20343_i0 PRJNA944406 21302 290 1.981567 5.7465443 Bacteria 2 Bacteria Bacteria 161 1.6e-44   NR MDR3623536.1 2047757 g20343 i0 72.6 5.93793103448276 95 26 98.3 0 5 289 273 367 MDR3623536.1 AAA family ATPase [Chlamydiales bacterium] diamond 1722 161 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27310002 27310002 PRJNA944406_P_NODE_54383_length_259_cov_1.591398_g53424_i0 PRJNA944406 54383 259 1.591398 4.12172082 Chlamydiota bacterium 2081524 Bacteria Bacteria 69.7 8.87e-13   NR MEM1282507.1 2081524 g53424 i0 60.4 0.555984555984556 48 19 55.6 0 146 3 1 48 MEM1282507.1 D-aminoacyl-tRNA deacylase [Chlamydiota bacterium] diamond 144 69.7 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
27537725 27537725 PRJNA944406_P_NODE_56223_length_257_cov_1.673913_g55264_i0 PRJNA944406 56223 257 1.673913 4.30195641 Pseudomonadati 3379134 Bacteria Bacteria 43.5 0.0238   NR MEI6634282.1 2081524 g55264 i0 28.8 2.40466926070039 73 52 85.2 0 220 2 460 532 MEI6634282.1 P-loop NTPase fold protein [Chlamydiota bacterium] diamond 618 43.9 0.990888382687927 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
27594175 27594175 PRJNA944406_P_NODE_57404_length_256_cov_1.683060_g56445_i0 PRJNA944406 57404 256 1.68306 4.3086336 Parachlamydia sp. 2052048 Bacteria Bacteria 145 1.89e-40   NR PJD96085.1 2052048 g56445 i0 81 1.98046875 84 16 98.4 0 256 5 153 236 PJD96085.1 MAG: recombinase XerC [Parachlamydia sp.] diamond 507 145 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
27594183 27594183 PRJNA944406_P_NODE_67464_length_250_cov_1.508475_g66505_i0 PRJNA944406 67464 250 1.508475 3.7711875 Chlamydiales bacterium 2047757 Bacteria Bacteria 58.2 1.51e-7   NR MDP1835205.1 2047757 g66505 i0 35.1 0.888 74 48 88.8 0 250 29 165 238 MDP1835205.1 SulP family inorganic anion transporter [Chlamydiales bacterium] diamond 222 58.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27878186 27878186 PRJNA944406_P_NODE_41225_length_271_cov_1.651515_g40266_i0 PRJNA944406 41225 271 1.651515 4.47560565 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 54.7 3.37e-6   NR MFI0434829.1 2052176 g40266 i0 56.4 1.22878228782288 55 24 60.9 0 255 91 698 752 MFI0434829.1 chromosome segregation protein SMC [Parachlamydiaceae bacterium] diamond 333 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28004729 28004729 PRJNA944406_P_NODE_33405_length_279_cov_1.150485_g32446_i0 PRJNA944406 33405 279 1.150485 3.20985315 Neochlamydia sp. TUME1 1478174 Bacteria Bacteria 68.6 4.76e-11   NR WP_155117567.1 1478174 g32446 i0 36.3 0.978494623655914 91 52 97.8 2 275 3 111 195 WP_155117567.1 hypothetical protein [Neochlamydia sp. TUME1] diamond 273 68.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. TUME1
28004767 28004767 PRJNA944406_P_NODE_84145_length_246_cov_2.560694_g83186_i0 PRJNA944406 84145 246 2.560694 6.29930724 Criblamydia sequanensis 340071 Bacteria Bacteria 57.4 1.36e-7   NR WP_041018397.1 340071 g83186 i0 42.9 2.85365853658537 77 43 92.7 1 16 243 38 114 WP_041018397.1 outer membrane protein [Criblamydia sequanensis] diamond 702 57.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
28383335 28383335 PRJNA944406_P_NODE_32866_length_279_cov_1.495146_g31907_i0 PRJNA944406 32866 279 1.495146 4.17145734 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 88.6 2.23e-18   NR MBA3238163.1 2052176 g31907 i0 45.7 0.989247311827957 92 49 98.9 1 2 277 218 308 MBA3238163.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 276 88.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28541438 28541438 PRJNA944406_P_NODE_110567_length_239_cov_2.777108_g109608_i0 PRJNA944406 110567 239 2.777108 6.63728812 Chlamydiales bacterium 2047757 Bacteria Bacteria 57.8 1.75e-7   NR MCH9626663.1 2047757 g109608 i0 40.7 1.01673640167364 81 41 95.4 3 3 230 423 501 MCH9626663.1 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [Chlamydiales bacterium] diamond 243 57.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28636213 28636213 PRJNA944406_P_NODE_52727_length_260_cov_2.550802_g51768_i0 PRJNA944406 52727 260 2.550802 6.6320852 Waddliaceae bacterium 2026802 Bacteria Bacteria 93.6 2.48e-20   NR HEY4832382.1 2026802 g51768 i0 52.6 1.09615384615385 95 35 98.1 1 259 5 76 170 HEY4832382.1 VWA domain-containing protein [Waddliaceae bacterium] diamond 285 93.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
28642906 28642906 PRJNA944406_P_NODE_21607_length_290_cov_1.419355_g20648_i0 PRJNA944406 21607 290 1.419355 4.1161295 Chlamydiia 204429 Bacteria Bacteria 167 8.54e-46   NR CDZ79676.1 1444712 g20648 i0 90.2 2.8551724137931 92 9 95.2 0 13 288 166 257 CDZ79676.1 ATP-dependent Clp protease ATP-binding subunit ClpC [Candidatus Rubidus massiliensis] diamond 828 167 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis
28667703 28667703 PRJNA944406_P_NODE_54407_length_259_cov_1.569892_g53448_i0 PRJNA944406 54407 259 1.569892 4.06602028 Parachlamydiales bacterium 2052178 Bacteria Bacteria 42.7 0.0434   NR MBN1915323.1 2052178 g53448 i0 44.3 0.706563706563707 61 31 70.7 2 208 26 53 110 MBN1915323.1 hypothetical protein [Parachlamydiales bacterium] diamond 183 42.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
28951931 28951931 PRJNA944406_P_NODE_29148_length_283_cov_1.171429_g28189_i0 PRJNA944406 29148 283 1.171429 3.31514407 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 158 3.41e-44   NR MBA2726776.1 2052176 g28189 i0 83.3 0.954063604240283 90 15 95.4 0 1 270 242 331 MBA2726776.1 preprotein translocase subunit SecY [Parachlamydiaceae bacterium] diamond 270 158 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29330532 29330532 PRJNA944406_P_NODE_100169_length_243_cov_0.905882_g99210_i0 PRJNA944406 100169 243 0.905882 2.20129326 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 78.2 1.23e-14   NR MFI0434829.1 2052176 g99210 i0 59.5 0.975308641975309 79 32 97.5 0 5 241 788 866 MFI0434829.1 chromosome segregation protein SMC [Parachlamydiaceae bacterium] diamond 237 78.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29393837 29393837 PRJNA944406_P_NODE_23649_length_288_cov_1.432558_g22690_i0 PRJNA944406 23649 288 1.432558 4.12576704 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 167 2.5899999999999993e-46   NR MBX9923513.1 2047756 g22690 i0 84.4 1 96 15 100 0 288 1 192 287 MBX9923513.1 DNA topoisomerase 3 [Rhabdochlamydiaceae bacterium] diamond 288 167 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
29558257 29558257 PRJNA944406_P_NODE_24110_length_288_cov_1.097674_g23151_i0 PRJNA944406 24110 288 1.097674 3.16130112 Candidatus Protochlamydia 282132 Bacteria Bacteria 106 3.11e-24   NR WP_052354885.1 1353977 g23151 i0 61.9 6.08333333333333 97 36 100 1 288 1 408 504 WP_052354885.1 protein-disulfide reductase DsbD family protein [Candidatus Protochlamydia sp. R18] diamond 1752 107 0.990654205607477 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp. R18
29621066 29621066 PRJNA944406_P_NODE_89390_length_245_cov_1.401163_g88431_i0 PRJNA944406 89390 245 1.401163 3.43284935 Candidatus Protochlamydia 282132 Bacteria Bacteria 117 2.07e-28   NR WP_032125715.1 389348 g88431 i0 64.2 1.98367346938776 81 29 99.2 0 245 3 63 143 WP_032125715.1 ATP-dependent Clp protease ATP-binding subunit [Candidatus Protochlamydia naegleriophila] diamond 486 117 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
30088484 30088484 PRJNA944406_P_NODE_57472_length_256_cov_1.661202_g56513_i0 PRJNA944406 57472 256 1.661202 4.25267712 Chlamydiia bacterium 2052156 Bacteria Bacteria 84.3 9.41e-17   NR MCB1149025.1 2052156 g56513 i0 54.8 0.85546875 73 33 85.5 0 3 221 142 214 MCB1149025.1 response regulator [Chlamydiia bacterium] diamond 219 84.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
30126641 30126641 PRJNA944406_P_NODE_109092_length_241_cov_0.916667_g108133_i0 PRJNA944406 109092 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 95.5 1.6399999999999998e-23   NR MCB1111841.1 2052156 g108133 i0 63.1 3.23651452282158 65 24 80.9 0 3 197 35 99 MCB1111841.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [Chlamydiia bacterium] diamond 780 96.3 0.991692627206646 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
30373325 30373325 PRJNA944406_P_NODE_99052_length_243_cov_0.905882_g98093_i0 PRJNA944406 99052 243 0.905882 2.20129326 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 76.6 9.09e-16   NR HEX4839701.1 2047756 g98093 i0 73.5 0.604938271604938 49 13 60.5 0 239 93 77 125 HEX4839701.1 type II toxin-antitoxin system VapC family toxin [Rhabdochlamydiaceae bacterium] diamond 147 76.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
30688713 30688713 PRJNA944406_P_NODE_72373_length_249_cov_0.875000_g71414_i0 PRJNA944406 72373 249 0.875 2.17875 Chlamydiota bacterium 2081524 Bacteria Bacteria 122 1.6899999999999998e-31   NR MES2199275.1 2081524 g71414 i0 67.5 1 83 27 100 0 1 249 182 264 MES2199275.1 extracellular solute-binding protein [Chlamydiota bacterium] diamond 249 122 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30910174 30910174 PRJNA944406_P_NODE_93814_length_244_cov_1.368421_g92855_i0 PRJNA944406 93814 244 1.368421 3.33894724 Criblamydia sequanensis 340071 Bacteria Bacteria 50.8 1.34e-5   NR WP_041018386.1 340071 g92855 i0 79.3 0.35655737704918 29 6 35.7 0 89 3 4 32 WP_041018386.1 cupin domain-containing protein [Criblamydia sequanensis] diamond 87 50.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
31542405 31542405 PRJNA944406_P_NODE_96816_length_244_cov_0.900585_g95857_i0 PRJNA944406 96816 244 0.900585 2.1974274 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 47.8 6.25e-4   NR MBA3602597.1 2052176 g95857 i0 33.3 0.995901639344262 81 38 95.9 2 1 234 177 244 MBA3602597.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 243 47.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
32333535 32333535 PRJNA944406_P_NODE_61499_length_252_cov_1.720670_g60540_i0 PRJNA944406 61499 252 1.72067 4.3360884 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 120 4.16e-31   NR WP_068468906.1 1414722 g60540 i0 65.9 0.976190476190476 82 28 97.6 0 5 250 195 276 WP_068468906.1 GNAT family N-acetyltransferase [Candidatus Protochlamydia phocaeensis] diamond 246 120 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
32523327 32523327 PRJNA944406_P_NODE_85419_length_246_cov_0.890173_g84460_i0 PRJNA944406 85419 246 0.890173 2.18982558 Candidatus Rubidus massiliensis 1444712 Bacteria Bacteria 106 2.87e-25   NR CDZ81364.1 1444712 g84460 i0 58.8 0.975609756097561 80 32 97.6 1 6 245 250 328 CDZ81364.1 putative neuraminidase (sialidase) [Candidatus Rubidus massiliensis] diamond 240 106 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis
32869572 32869572 PRJNA944406_P_NODE_54020_length_259_cov_2.064516_g53061_i0 PRJNA944406 54020 259 2.064516 5.34709644 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 127 4.69e-32   NR MBA3237546.1 2052176 g53061 i0 69.8 0.996138996138996 86 26 99.6 0 258 1 120 205 MBA3237546.1 glycogen-debranching protein [Parachlamydiaceae bacterium] diamond 258 127 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
32869603 32869603 PRJNA944406_P_NODE_94320_length_244_cov_0.900585_g93361_i0 PRJNA944406 94320 244 0.900585 2.1974274 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 43.5 0.00433   NR MBA3722920.1 2052176 g93361 i0 52.9 0.897540983606557 34 16 41.8 0 105 4 1 34 MBA3722920.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 219 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
32900950 32900950 PRJNA944406_P_NODE_62220_length_251_cov_2.264045_g61261_i0 PRJNA944406 62220 251 2.264045 5.68275295 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 86.7 4.03e-19   NR HRD55020.1 2052176 g61261 i0 55.4 0.99203187250996006 83 37 99.2 0 2 250 8 90 HRD55020.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 249 86.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;