RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Candidatus Sumerlaeota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Sumerlaeota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA944406 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18776843 18776843 PRJNA944406_P_NODE_89855_length_245_cov_0.895349_g88896_i0 PRJNA944406 89855 245 0.895349 2.19360505 Candidatus Sumerlaeaceae bacterium 2315423 Bacteria Bacteria 137 2.7199999999999997e-35   NR MBX7245349.1 2315423 g88896 i0 81.5 1.98367346938776 81 15 99.2 0 244 2 788 868 MBX7245349.1 transcription-repair coupling factor [Candidatus Sumerlaeaceae bacterium] diamond 486 137 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae   Candidatus Sumerlaeaceae bacterium
29645932 29645932 PRJNA944406_P_NODE_39390_length_273_cov_1.480000_g38431_i0 PRJNA944406 39390 273 1.48 4.0404 Candidatus Sumerlaeota bacterium 2107588 Bacteria Bacteria 123 2.7099999999999995e-31   NR MCC7391464.1 2107588 g38431 i0 67.3 1.07692307692308 98 23 97.8 1 272 6 102 199 MCC7391464.1 cyanophycinase [Candidatus Sumerlaeota bacterium] diamond 294 123 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota         Candidatus Sumerlaeota bacterium
31953422 31953422 PRJNA944406_P_NODE_55017_length_258_cov_2.140541_g54058_i0 PRJNA944406 55017 258 2.140541 5.52259578 Candidatus Sumerlaeota bacterium 2107588 Bacteria Bacteria 84.3 1.02e-16   NR MCX7020271.1 2107588 g54058 i0 46.4 0.976744186046512 84 45 97.7 0 2 253 233 316 MCX7020271.1 glycosyltransferase [Candidatus Sumerlaeota bacterium] diamond 252 84.3 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota         Candidatus Sumerlaeota bacterium
32396601 32396601 PRJNA944406_P_NODE_71339_length_249_cov_1.750000_g70380_i0 PRJNA944406 71339 249 1.75 4.3575 Candidatus Sumerlaeia bacterium 2715255 Bacteria Bacteria 62.4 4.93e-9   NR MBX3730800.1 2715255 g70380 i0 44.8 4.27710843373494 96 34 97.6 4 249 7 655 746 MBX3730800.1 trypsin-like peptidase domain-containing protein [Candidatus Sumerlaeia bacterium] diamond 1065 62.4 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia       Candidatus Sumerlaeia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;