RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16562021 16562021 PRJNA944406_P_NODE_46333_length_266_cov_2.502591_g45374_i0 PRJNA944406 46333 266 2.502591 6.65689206 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 68.6 1.99e-11   NR MEI8176177.1 2035772 g45374 i0 48.1 0.890977443609023 79 40 89.1 1 264 28 185 262 MEI8176177.1 tryptophan synthase subunit alpha [Candidatus Omnitrophota bacterium] diamond 237 68.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30815165 30815165 PRJNA944406_P_NODE_105474_length_242_cov_0.911243_g104515_i0 PRJNA944406 105474 242 0.911243 2.20520806 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 44.7 0.00692   NR MFA5117248.1 2035772 g104515 i0 58.3 0.446280991735537 36 15 44.6 0 242 135 225 260 MFA5117248.1 dienelactone hydrolase family protein [Candidatus Omnitrophota bacterium] diamond 108 44.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32301921 32301921 PRJNA944406_P_NODE_68119_length_250_cov_0.870056_g67160_i0 PRJNA944406 68119 250 0.870056 2.17514 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 101 2.48e-24   NR MBI3332972.1 2035772 g67160 i0 62.2 0.984 82 31 98.4 0 3 248 116 197 MBI3332972.1 response regulator transcription factor [Candidatus Omnitrophota bacterium] diamond 246 101 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;