RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA944406 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7302161 7302161 PRJNA944406_P_NODE_102886_length_242_cov_0.911243_g101927_i0 PRJNA944406 102886 242 0.911243 2.20520806 Paraphysoderma sedebokerense 1500003 Fungi Fungi 130 2.82e-34   NR KAI9140464.1 1500003 g101927 i0 80 0.991735537190083 80 16 99.2 0 242 3 206 285 KAI9140464.1 acyl-CoA dehydrogenase/oxidase [Paraphysoderma sedebokerense] diamond 240 130 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
25151167 25151167 PRJNA944406_P_NODE_80360_length_247_cov_1.649425_g79401_i0 PRJNA944406 80360 247 1.649425 4.07407975 root 1 Root_unresolved Root_unresolved 146 3.6399999999999997e-40   NR KAI9224651.1 64508 g79401 i0 76.8 2.89068825910931 82 19 99.6 0 247 2 47 128 KAI9224651.1 actin family [Blastocladiella britannica] diamond 714 147 0.993197278911565 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
27404722 27404722 PRJNA944406_P_NODE_15703_length_325_cov_1.087302_g14744_i0 PRJNA944406 15703 325 1.087302 3.5337315 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 137 4.38e-39   NR KNE71519.1 578462 g14744 i0 68 7.56923076923077 103 33 95.1 0 310 2 1 103 KNE71519.1 60S ribosomal protein [Allomyces macrogynus ATCC 38327] diamond 2460 137 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
27499402 27499402 PRJNA944406_P_NODE_20363_length_293_cov_1.377273_g19404_i0 PRJNA944406 20363 293 1.377273 4.03540989 Blastocladiella emersonii ATCC 22665 1313167 Fungi Fungi 75.1 9.14e-14   NR KAI9159463.1 1313167 g19404 i0 65.4 1.12627986348123 52 18 53.2 0 156 1 29 80 KAI9159463.1 60S ribosomal protein L8 [Blastocladiella emersonii ATCC 22665] diamond 330 75.1 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
28351764 28351764 PRJNA944406_P_NODE_44386_length_268_cov_1.615385_g43427_i0 PRJNA944406 44386 268 1.615385 4.3292318 Paraphysoderma sedebokerense 1500003 Fungi Fungi 122 1.94e-31   NR KAI9140511.1 1500003 g43427 i0 67.4 6.94029850746269 89 23 99.6 2 1 267 218 300 KAI9140511.1 WD40-repeat-containing domain protein [Paraphysoderma sedebokerense] diamond 1860 122 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
29236007 29236007 PRJNA944406_P_NODE_82109_length_247_cov_0.885057_g81150_i0 PRJNA944406 82109 247 0.885057 2.18609079 Paraphysoderma sedebokerense 1500003 Fungi Fungi 89 1.05e-18   NR KAI9144818.1 1500003 g81150 i0 51.2 1.97975708502024 82 34 94.7 2 12 245 125 204 KAI9144818.1 Ctr copper transporter family-domain-containing protein [Paraphysoderma sedebokerense] diamond 489 89 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;