RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA944406 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28162496 28162496 PRJNA944406_P_NODE_49365_length_264_cov_1.235602_g48406_i0 PRJNA944406 49365 264 1.235602 3.26198928 Babesia bovis T2Bo 484906 SAR_Eukaryotes SAR_Eukaryotes 54.3 4.05e-6   NR XP_001612222.1 484906 g48406 i0 34.5 2.625 87 48 96.6 2 264 10 330 409 XP_001612222.1 histone deacetylase family protein [Babesia bovis T2Bo] diamond 693 54.3 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bovis
29614465 29614465 PRJNA944406_P_NODE_73270_length_249_cov_0.875000_g72311_i0 PRJNA944406 73270 249 0.875 2.17875 Sarcocystis calchasi 1344799 SAR_Eukaryotes SAR_Eukaryotes 105 4.1800000000000005e-27   NR CAL7860326.1 1344799 g72311 i0 65.8 4.67469879518072 76 26 91.6 0 232 5 41 116 CAL7860326.1 unnamed protein product [Sarcocystis calchasi] diamond 1164 105 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis calchasi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;