RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 5 ✖

bioproject 1

  • PRJNA944406 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26772157 26772157 PRJNA944406_P_NODE_77021_length_248_cov_0.880000_g76062_i0 PRJNA944406 77021 248 0.88 2.1824 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-16 2013743 Bacteria Bacteria 56.2 3.36e-7   NR PKN50115.1 2013743 g76062 i0 38.9 1.82661290322581 72 44 87.1 0 4 219 129 200 PKN50115.1 MAG: hypothetical protein CVU58_02220 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-16] diamond 453 56.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-16
27689192 27689192 PRJNA944406_P_NODE_98904_length_243_cov_0.905882_g97945_i0 PRJNA944406 98904 243 0.905882 2.20129326 Deltaproteobacteria bacterium 13_1_4 2026735 Bacteria Bacteria 53.9 2.13e-6   NR OLC17741.1 1805123 g97945 i0 46.6 2.96296296296296 58 28 71.6 2 1 174 67 121 OLC17741.1 MAG: hypothetical protein AUH38_05190 [Deltaproteobacteria bacterium 13_1_40CM_68_24] diamond 720 53.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium 13_1_40CM_68_24
28383318 28383318 PRJNA944406_P_NODE_109386_length_241_cov_0.916667_g108427_i0 PRJNA944406 109386 241 0.916667 2.20916747 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 2013741 Bacteria Bacteria 75.5 1.09e-13   NR PKN58898.1 2013741 g108427 i0 48.8 0.995850622406639 80 40 98.3 1 241 5 67 146 PKN58898.1 MAG: hypothetical protein CVU56_03490, partial [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 240 75.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
30056794 30056794 PRJNA944406_P_NODE_78351_length_248_cov_0.880000_g77392_i0 PRJNA944406 78351 248 0.88 2.1824 Olavius algarvensis Delta 1 endosymbiont 334747 Bacteria Bacteria 42.7 0.0372   NR CAB1083418.1 334747 g77392 i0 31.8 0.798387096774194 66 41 75 1 45 230 234 299 CAB1083418.1 hypothetical protein D1AOALGA4SA_10986 [Olavius algarvensis Delta 1 endosymbiont] diamond 198 42.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis Delta 1 endosymbiont
31099441 31099441 PRJNA944406_P_NODE_77055_length_248_cov_0.880000_g76096_i0 PRJNA944406 77055 248 0.88 2.1824 uncultured delta proteobacterium 34034 Bacteria Bacteria 64.7 1.13e-10   NR BAL57075.1 34034 g76096 i0 78.4 0.44758064516129 37 8 44.8 0 248 138 133 169 BAL57075.1 hypothetical conserved protein [uncultured delta proteobacterium] diamond 111 64.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;