RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA944150" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA944150 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6026812 6026812 PRJNA944150_P_NODE_28345_length_180_cov_2.633588_g28094_i0 PRJNA944150 28345 180 2.633588 4.7404584 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 88.2 1.53e-18   NR MFL5578617.1 2026741 g28094 i0 76.3 2.95 59 10 98.3 1 179 3 372 426 MFL5578617.1 penicillin-binding protein 1A [Gemmatimonadaceae bacterium] diamond 531 88.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27063673 27063673 PRJNA944150_P_NODE_43742_length_162_cov_0.902655_g43491_i0 PRJNA944150 43742 162 0.902655 1.4623011 Bacteria 2 Bacteria Bacteria 50.8 1.59e-5   NR NUQ13207.1 2026741 g43491 i0 50 3.01851851851852 52 22 90.7 2 16 162 35 85 NUQ13207.1 glycosyltransferase family 8 protein [Gemmatimonadaceae bacterium] diamond 489 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27151280 27151280 PRJNA944150_P_NODE_42122_length_163_cov_0.894737_g41871_i0 PRJNA944150 42122 163 0.894737 1.45842131 Gemmatirosa sp. 2510638 Bacteria Bacteria 87.8 3.27e-21   NR HEY0776598.1 2510638 g41871 i0 86 0.920245398773006 50 7 92 0 14 163 1 50 HEY0776598.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein [Gemmatirosa sp.] diamond 150 87.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
30151408 30151408 PRJNA944150_P_NODE_39712_length_164_cov_2.460870_g39461_i0 PRJNA944150 39712 164 2.46087 4.0358268 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 52.4 2.93e-7   NR HSJ65562.1 2026741 g39461 i0 75.7 2.03048780487805 37 9 67.7 0 114 4 22 58 HSJ65562.1 exodeoxyribonuclease VII small subunit [Gemmatimonadaceae bacterium] diamond 333 52.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31257539 31257539 PRJNA944150_P_NODE_22195_length_192_cov_2.300699_g21944_i0 PRJNA944150 22195 192 2.300699 4.41734208 Roseisolibacter sp. H3M3-2 3031323 Bacteria Bacteria 102 1.59e-25   NR WP_275831109.1 3031323 g21944 i0 72.6 0.96875 62 17 96.9 0 188 3 92 153 WP_275831109.1 BON domain-containing protein [Roseisolibacter sp. H3M3-2] diamond 186 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter sp. H3M3-2
32143335 32143335 PRJNA944150_P_NODE_29118_length_179_cov_1.361538_g28867_i0 PRJNA944150 29118 179 1.361538 2.43715302 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 73.9 1.56e-13   NR HEX5818121.1 2448054 g28867 i0 60.7 1.84357541899441 56 22 93.9 0 179 12 269 324 HEX5818121.1 xanthine dehydrogenase family protein molybdopterin-binding subunit [Gemmatimonadales bacterium] diamond 330 73.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;