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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA944150" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA944150 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27119817 27119817 PRJNA944150_P_NODE_28062_length_181_cov_1.439394_g27811_i0 PRJNA944150 28062 181 1.439394 2.60530314 Ranitomeya imitator 111125 Chordata Chordata 48.9 1.02e-4   NR CAJ0956274.1 111125 g27811 i0 57.6 0.546961325966851 33 14 54.7 0 100 2 1 33 CAJ0956274.1 unnamed protein product [Ranitomeya imitator] diamond 99 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
27562164 27562164 PRJNA944150_P_NODE_29724_length_178_cov_1.085271_g29473_i0 PRJNA944150 29724 178 1.085271 1.93178238 Bufotes viridis 30338 Chordata Chordata 44.7 0.00313   NR CAK8629749.1 30338 g29473 i0 72.4 0.48876404494382 29 8 48.9 0 27 113 336 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 87 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27941377 27941377 PRJNA944150_P_NODE_31185_length_175_cov_1.404762_g30934_i0 PRJNA944150 31185 175 1.404762 2.4583335 Phyllostomus discolor 89673 Chordata Chordata 54.7 9.15e-7   NR KAF6119802.1 89673 g30934 i0 53.8 0.891428571428571 52 22 89.1 1 1 156 107 156 KAF6119802.1 hypothetical protein HJG60_010204 [Phyllostomus discolor] diamond 156 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
28137720 28137720 PRJNA944150_P_NODE_585_length_1048_cov_2.494494_g439_i0 PRJNA944150 585 1048 2.494494 26.14229712 root 1 Root_unresolved Root_unresolved 84.7 2.85e-15   NR XP_053573435.1 8345 g439 i0 33.9 2.29293893129771 124 80 34.9 1 702 337 65 188 XP_053573435.1 deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial [Bombina bombina] diamond 2403 84.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
29456525 29456525 PRJNA944150_P_NODE_34390_length_169_cov_1.700000_g34139_i0 PRJNA944150 34390 169 1.7 2.873 Ambystoma mexicanum 8296 Chordata Chordata 49.3 6.81e-5   NR XP_069507244.1 8296 g34139 i0 31.3 2.43195266272189 83 30 99.4 1 168 1 159 241 XP_069507244.1 zinc finger protein 217 [Ambystoma mexicanum] diamond 411 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
30025440 30025440 PRJNA944150_P_NODE_13091_length_236_cov_1.090909_g12840_i0 PRJNA944150 13091 236 1.090909 2.57454524 Erpetoichthys calabaricus 27687 Chordata Chordata 110 6.460000000000001e-27   NR XP_051791274.1 27687 g12840 i0 80.3 7.22033898305085 71 13 89 1 210 1 115 185 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1704 110 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
30790349 30790349 PRJNA944150_P_NODE_24554_length_187_cov_2.333333_g24303_i0 PRJNA944150 24554 187 2.333333 4.36333271 Cygnus 8867 Chordata Chordata 47.4 4.27e-4   NR XP_035425638.2 8868 g24303 i0 70.4 2.85561497326203 27 8 43.3 0 184 104 661 687 XP_035425638.2 LOW QUALITY PROTEIN: deleted in malignant brain tumors 1 protein-like [Cygnus atratus] diamond 534 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cygnus Cygnus atratus
31890104 31890104 PRJNA944150_P_NODE_4837_length_390_cov_2.046921_g4587_i0 PRJNA944150 4837 390 2.046921 7.9829919 Leucoraja erinaceus 7782 Chordata Chordata 72 5.07e-12   NR XP_055493235.1 7782 g4587 i0 60.4 1.21538461538462 53 21 40.8 0 207 49 114 166 XP_055493235.1 uncharacterized protein LOC129698247 [Leucoraja erinaceus] diamond 474 72 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
31953366 31953366 PRJNA944150_P_NODE_31857_length_174_cov_0.848000_g31606_i0 PRJNA944150 31857 174 0.848 1.47552 Heterodontus francisci 7792 Chordata Chordata 57.8 2.05e-8   NR XP_067884387.1 7792 g31606 i0 56.6 1.8448275862069 53 23 91.4 0 3 161 86 138 XP_067884387.1 histone H2B 1/2-like [Heterodontus francisci] diamond 321 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
32245329 32245329 PRJNA944150_P_NODE_12938_length_237_cov_2.781915_g12687_i0 PRJNA944150 12938 237 2.781915 6.59313855 Chordata 7711 Chordata Chordata 42.4 0.0458   NR XP_034863853.1 9715 g12687 i0 69.6 1.34177215189873 23 7 29.1 0 138 206 273 295 XP_034863853.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Mirounga leonina] diamond 318 42.7 0.992974238875878 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Mirounga Mirounga leonina
32364959 32364959 PRJNA944150_P_NODE_9939_length_271_cov_4.391892_g9688_i0 PRJNA944150 9939 271 4.391892 11.90202732 Zosterops borbonicus 364589 Chordata Chordata 42.7 0.0241   NR TRZ17703.1 364589 g9688 i0 34.4 0.675276752767528 61 37 64.2 1 46 219 32 92 TRZ17703.1 hypothetical protein HGM15179_009421 [Zosterops borbonicus] diamond 183 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Zosteropidae Zosterops Zosterops borbonicus
32655569 32655569 PRJNA944150_P_NODE_43560_length_162_cov_0.902655_g43309_i0 PRJNA944150 43560 162 0.902655 1.4623011 Mammalia 40674 Chordata Chordata 49.7 4.53e-5   NR XDA73205.1 9940 g43309 i0 83.3 0.888888888888889 24 4 44.4 0 1 72 519 542 XDA73205.1 hypothetical protein R6Z07_003529 [Ovis aries] diamond 144 50.1 0.992015968063872 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
32680345 32680345 PRJNA944150_P_NODE_16940_length_210_cov_3.130435_g16689_i0 PRJNA944150 16940 210 3.130435 6.5739135 Nyctereutes procyonoides 34880 Chordata Chordata 45.4 0.00255   NR XP_055170296.1 34880 g16689 i0 85.7 2.42857142857143 28 3 38.6 1 21 101 32 59 XP_055170296.1 rho GTPase-activating protein 20-like isoform X1 [Nyctereutes procyonoides] diamond 510 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
32900911 32900911 PRJNA944150_P_NODE_47020_length_155_cov_3.754717_g46769_i0 PRJNA944150 47020 155 3.754717 5.81981135 Sus scrofa 9823 Chordata Chordata 104 1.26e-24   NR XP_020938199.1 9823 g46769 i0 100 2.96129032258065 51 0 98.7 0 1 153 436 486 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 459 104 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;