RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA942359" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA942359 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4751371 4751371 PRJNA942359_P_NODE_18444_length_245_cov_0.906977_g18329_i0 PRJNA942359 18444 245 0.906977 2.22209365 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 79 6.88e-15   NR HYJ06632.1 2201154 g18329 i0 94.7 0.46530612244898 38 2 46.5 0 245 132 908 945 HYJ06632.1 zinc-dependent metalloprotease family protein [Chthoniobacterales bacterium] diamond 114 79 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28926855 28926855 PRJNA942359_P_NODE_18228_length_245_cov_0.906977_g18113_i0 PRJNA942359 18228 245 0.906977 2.22209365 Verrucomicrobiota 74201 Bacteria Bacteria 131 1.68e-33   NR MEA3186286.1 2510640 g18113 i0 83.8 6.86938775510204 80 10 98 2 240 1 487 563 MEA3186286.1 formate dehydrogenase beta subunit [Chthoniobacter sp.] diamond 1683 131 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
29519909 29519909 PRJNA942359_P_NODE_18170_length_245_cov_0.906977_g18055_i0 PRJNA942359 18170 245 0.906977 2.22209365 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 115 7.15e-28   NR MEW6304817.1 2026799 g18055 i0 72.8 1.97142857142857 81 18 99.2 2 245 3 117 193 MEW6304817.1 DUF2514 family protein [Verrucomicrobiota bacterium] diamond 483 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31486000 31486000 PRJNA942359_P_NODE_19236_length_243_cov_0.917647_g19121_i0 PRJNA942359 19236 243 0.917647 2.22988221 Bacteria 2 Bacteria Bacteria 81.3 8.81e-16   NR MSU68344.1 2006848 g19121 i0 88.4 4.39506172839506 43 5 53.1 0 131 3 1 43 MSU68344.1 sugar porter family MFS transporter [Opitutaceae bacterium] diamond 1068 81.6 0.996323529411765 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;