RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA942359" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA942359 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27221453 27221453 PRJNA942359_P_NODE_14002_length_252_cov_0.871508_g13887_i0 PRJNA942359 14002 252 0.871508 2.19620016 Mammalia 40674 Chordata Chordata 44.3 0.0111   NR CAD7667460.1 34880 g13887 i0 51.4 0.904761904761905 37 18 44 0 230 120 18 54 CAD7667460.1 unnamed protein product [Nyctereutes procyonoides] diamond 228 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
27467791 27467791 PRJNA942359_P_NODE_14383_length_251_cov_0.876404_g14268_i0 PRJNA942359 14383 251 0.876404 2.19977404 Hippopotamus amphibius kiboko 575201 Chordata Chordata 52 5.43e-6   NR XP_057554635.1 575201 g14268 i0 45 0.717131474103586 60 33 71.7 0 18 197 74 133 XP_057554635.1 heat shock factor-binding protein 1-like protein 1 isoform X1 [Hippopotamus amphibius kiboko] diamond 180 52 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Hippopotamidae Hippopotamus Hippopotamus amphibius
28067540 28067540 PRJNA942359_P_NODE_13725_length_252_cov_0.871508_g13610_i0 PRJNA942359 13725 252 0.871508 2.19620016 Eschrichtius robustus 9764 Chordata Chordata 135 1.52e-36   NR KAJ8798166.1 9764 g13610 i0 81.7 0.976190476190476 82 13 95.2 1 11 250 39 120 KAJ8798166.1 hypothetical protein J1605_016799 [Eschrichtius robustus] diamond 246 135 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
28099081 28099081 PRJNA942359_P_NODE_14945_length_250_cov_0.881356_g14830_i0 PRJNA942359 14945 250 0.881356 2.20339 Muntiacus reevesi 9886 Chordata Chordata 43.1 0.0299   NR XP_065769915.1 9886 g14830 i0 39.3 0.672 56 34 67.2 0 63 230 68 123 XP_065769915.1 solute carrier family 9 member C1 [Muntiacus reevesi] diamond 168 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
29053316 29053316 PRJNA942359_P_NODE_18348_length_245_cov_0.906977_g18233_i0 PRJNA942359 18348 245 0.906977 2.22209365 Mammalia 40674 Chordata Chordata 43.5 0.0197   NR XP_055448526.1 48139 g18233 i0 44.2 3.93061224489796 52 28 63.7 1 176 21 33 83 XP_055448526.1 WD repeat domain phosphoinositide-interacting protein 3 [Psammomys obesus] diamond 963 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Psammomys Psammomys obesus
30632208 30632208 PRJNA942359_P_NODE_15053_length_250_cov_0.881356_g14938_i0 PRJNA942359 15053 250 0.881356 2.20339 Chordata 7711 Chordata Chordata 55.8 9.44e-7   NR XP_042194610.1 7868 g14938 i0 96 13.104 25 1 30 0 248 174 508 532 XP_042194610.1 CTP synthase 1 isoform X2 [Callorhinchus milii] diamond 3276 56.2 0.99288256227758 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
31668682 31668682 PRJNA942359_P_NODE_19857_length_242_cov_0.923077_g19742_i0 PRJNA942359 19857 242 0.923077 2.23384634 Monodon monoceros 40151 Chordata Chordata 44.3 0.011   NR TKC37999.1 40151 g19742 i0 71 0.384297520661157 31 8 37.2 1 182 93 1747 1777 TKC37999.1 hypothetical protein EI555_002844, partial [Monodon monoceros] diamond 93 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Monodon Monodon monoceros
32837955 32837955 PRJNA942359_P_NODE_19140_length_243_cov_1.835294_g19025_i0 PRJNA942359 19140 243 1.835294 4.45976442 Oryctolagus cuniculus 9986 Chordata Chordata 161 7.61e-49   NR XP_002715572.2 9986 g19025 i0 98.8 79.0123456790123 80 1 98.8 0 243 4 2 81 XP_002715572.2 large ribosomal subunit protein eL43-like [Oryctolagus cuniculus] diamond 19200 162 0.993827160493827 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;