RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA942359" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA942359 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3473824 3473824 PRJNA942359_P_NODE_20543_length_233_cov_2.650000_g20428_i0 PRJNA942359 20543 233 2.65 6.1745 Acytosteliaceae 2058183 Evosea other_Eukaryota 125 4.569999999999999e-32   NR XP_020431174.1 670386 g20428 i0 67.1 22.7639484978541 76 25 97.9 0 231 4 104 179 XP_020431174.1 calreticulin [Heterostelium album PN500] diamond 5304 125 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
32900889 32900889 PRJNA942359_P_NODE_17980_length_245_cov_0.906977_g17865_i0 PRJNA942359 17980 245 0.906977 2.22209365 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 46.6 0.00171   NR PRP89300.1 1890364 g17865 i0 35.4 0.96734693877551 79 41 85.7 3 235 26 1014 1091 PRP89300.1 hypothetical protein PROFUN_02174 [Planoprotostelium fungivorum] diamond 237 46.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;