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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA940501" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA940501 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17498225 17498225 PRJNA940501_S_NODE_26214_length_336_cov_5.133106_g25396_i0 PRJNA940501 26214 336 5.133106 17.24723616 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 82.8 1.57e-16   NR KAE9548877.1 2598192 g25396 i0 56.3 0.714285714285714 80 34 71.4 1 308 69 170 248 KAE9548877.1 hypothetical protein FO519_007902 [Halicephalobus sp. NKZ332] diamond 240 82.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
23873899 23873899 PRJNA940501_S_NODE_45599_length_291_cov_3.189516_g44781_i0 PRJNA940501 45599 291 3.189516 9.28149156 Trichinella 6333 Nematoda Nematoda 147 9.83e-39   NR KRY33283.1 6334 g44781 i0 87.8 10.9484536082474 82 10 84.5 0 290 45 709 790 KRY33283.1 U3 small nucleolar RNA-associated protein 15 -like protein [Trichinella spiralis] diamond 3186 147 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
26620467 26620467 PRJNA940501_S_NODE_218241_length_187_cov_1.958333_g217423_i0 PRJNA940501 218241 187 1.958333 3.66208271 root 1 Root_unresolved Root_unresolved 55.1 7.82e-7   NR VDM16675.1 6293 g217423 i0 55.8 8.34224598930481 52 19 83.4 1 2 157 338 385 VDM16675.1 unnamed protein product [Wuchereria bancrofti] diamond 1560 55.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
27158169 27158169 PRJNA940501_S_NODE_221942_length_186_cov_1.811189_g221124_i0 PRJNA940501 221942 186 1.811189 3.36881154 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.7 0.0172   NR NP_491413.2 6239 g221124 i0 70.8 8.29032258064516 24 7 38.7 0 6 77 395 418 NP_491413.2 Aspartate aminotransferase [Caenorhabditis elegans] diamond 1542 43.1 0.990719257540603 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27309854 27309854 PRJNA940501_S_NODE_19983_length_363_cov_10.706250_g19165_i0 PRJNA940501 19983 363 10.70625 38.8636875 Steinernema carpocapsae 34508 Nematoda Nematoda 45.4 0.016   NR TKR73650.1 34508 g19165 i0 44.1 0.487603305785124 59 32 48.8 1 1 177 558 615 TKR73650.1 hypothetical protein L596_020936 [Steinernema carpocapsae] diamond 177 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
27411592 27411592 PRJNA940501_S_NODE_333583_length_160_cov_2.666667_g332765_i0 PRJNA940501 333583 160 2.666667 4.2666672 Opisthokonta 33154 Nematoda Nematoda 46.2 7.24e-4   NR VDN81525.1 6280 g332765 i0 74.1 5.53125 27 7 50.6 0 80 160 285 311 VDN81525.1 unnamed protein product [Brugia pahangi] diamond 885 46.6 0.991416309012876 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia pahangi
27467698 27467698 PRJNA940501_S_NODE_146943_length_213_cov_1.105882_g146125_i0 PRJNA940501 146943 213 1.105882 2.35552866 Caenorhabditis angaria 860376 Nematoda Nematoda 45.1 0.00401   NR CAI5447747.1 860376 g146125 i0 43.1 0.71830985915493 51 24 69 2 186 40 122 169 CAI5447747.1 unnamed protein product [Caenorhabditis angaria] diamond 153 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
28074300 28074300 PRJNA940501_S_NODE_367845_length_154_cov_1.693694_g367027_i0 PRJNA940501 367845 154 1.693694 2.60828876 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.4 2.36e-4   NR KAI6224907.1 269767 g367027 i0 48.9 2.66883116883117 45 23 87.7 0 3 137 159 203 KAI6224907.1 RNA-binding protein 34 [Aphelenchoides besseyi] diamond 411 47.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
28383223 28383223 PRJNA940501_S_NODE_29626_length_325_cov_5.943262_g28808_i0 PRJNA940501 29626 325 5.943262 19.3156015 Steinernema hermaphroditum 289476 Nematoda Nematoda 78.2 3.18e-14   NR KAK0396201.1 289476 g28808 i0 68 1.38461538461538 50 16 46.2 0 46 195 394 443 KAK0396201.1 hypothetical protein QR680_001619 [Steinernema hermaphroditum] diamond 450 78.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
28832045 28832045 PRJNA940501_S_NODE_110668_length_231_cov_1.829787_g109850_i0 PRJNA940501 110668 231 1.829787 4.22680797 Metazoa 33208 Nematoda Nematoda 81.6 1.8e-18   NR XP_001892530.2 6279 g109850 i0 70.4 19.1038961038961 54 16 70.1 0 69 230 4 57 XP_001892530.2 Uncharacterized protein BM_BM17215 [Brugia malayi] diamond 4413 81.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
28863644 28863644 PRJNA940501_S_NODE_53588_length_280_cov_1.603376_g52770_i0 PRJNA940501 53588 280 1.603376 4.4894528 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 131 3.46e-33   NR TKR77856.1 34508 g52770 i0 73.1 15.9428571428571 93 25 99.6 0 2 280 773 865 TKR77856.1 hypothetical protein L596_018757 [Steinernema carpocapsae] diamond 4464 131 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
28888389 28888389 PRJNA940501_S_NODE_393328_length_151_cov_0.870370_g392510_i0 PRJNA940501 393328 151 0.87037 1.3142587 Pristionchus fissidentatus 1538716 Nematoda Nematoda 58.9 2.07e-8   NR GMT14366.1 1538716 g392510 i0 65.1 1.64900662251656 43 15 85.4 0 151 23 938 980 GMT14366.1 hypothetical protein PFISCL1PPCAC_5663, partial [Pristionchus fissidentatus] diamond 249 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
28958662 28958662 PRJNA940501_S_NODE_331088_length_161_cov_1.228814_g330270_i0 PRJNA940501 331088 161 1.228814 1.97839054 Opisthokonta 33154 Nematoda Nematoda 43.1 0.00909   NR KAI6241209.1 1052528 g330270 i0 73.1 1.45341614906832 26 7 48.4 0 4 81 1160 1185 KAI6241209.1 Splicing factor 3B subunit 1 [Aphelenchoides fujianensis] diamond 234 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fujianensis
29046386 29046386 PRJNA940501_S_NODE_15028_length_399_cov_1.907303_g14214_i0 PRJNA940501 15028 399 1.907303 7.61013897 Aphelenchoides avenae 70226 Nematoda Nematoda 45.8 0.0155   NR KAH7720310.1 70226 g14214 i0 50.9 0.398496240601504 53 25 39.1 1 131 286 440 492 KAH7720310.1 diphthamide biosynthesis protein 2 [Aphelenchoides avenae] diamond 159 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
29456463 29456463 PRJNA940501_S_NODE_51970_length_282_cov_2.041841_g51152_i0 PRJNA940501 51970 282 2.041841 5.75799162 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 70.1 1.41e-11   NR CAD5206829.1 465554 g51152 i0 50 2.64893617021277 60 30 63.8 0 258 79 407 466 CAD5206829.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 747 70.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
29804031 29804031 PRJNA940501_S_NODE_79831_length_253_cov_1.342857_g79013_i0 PRJNA940501 79831 253 1.342857 3.39742821 Dracunculus medinensis 318479 Nematoda Nematoda 90.1 8.94e-19   NR VDN55548.1 318479 g79013 i0 65.6 2.28853754940711 61 21 72.3 0 2 184 272 332 VDN55548.1 unnamed protein product, partial [Dracunculus medinensis] diamond 579 90.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
29867275 29867275 PRJNA940501_S_NODE_208711_length_190_cov_1.755102_g207893_i0 PRJNA940501 208711 190 1.755102 3.3346938 Cylicocyclus nassatus 53992 Nematoda Nematoda 42.4 0.0245   NR CAJ0588294.1 53992 g207893 i0 31.9 0.742105263157895 47 28 67.9 1 143 15 146 192 CAJ0588294.1 unnamed protein product [Cylicocyclus nassatus] diamond 141 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
29993680 29993680 PRJNA940501_S_NODE_10631_length_456_cov_8.092010_g9829_i0 PRJNA940501 10631 456 8.09201 36.8995656 Caenorhabditis bovis 2654633 Nematoda Nematoda 46.6 0.0152   NR CAB3400218.1 2654633 g9829 i0 37.7 0.348684210526316 53 32 34.9 1 326 168 766 817 CAB3400218.1 unnamed protein product [Caenorhabditis bovis] diamond 159 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis bovis
30474519 30474519 PRJNA940501_S_NODE_167293_length_204_cov_2.043478_g166475_i0 PRJNA940501 167293 204 2.043478 4.16869512 Metazoa 33208 Nematoda Nematoda 80.5 6.5e-17   NR KAE9418662.1 6313 g166475 i0 84.6 13.0147058823529 39 6 57.4 0 200 84 144 182 KAE9418662.1 hypothetical protein Angca_010247, partial [Angiostrongylus cantonensis] diamond 2655 81.3 0.990159901599016 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
30625391 30625391 PRJNA940501_S_NODE_85073_length_248_cov_3.643902_g84255_i0 PRJNA940501 85073 248 3.643902 9.03687696 Meloidogyne enterolobii 390850 Nematoda Nematoda 56.2 6.28e-7   NR CAD2159168.1 390850 g84255 i0 51.9 4.01612903225806 52 25 62.9 0 237 82 264 315 CAD2159168.1 unnamed protein product [Meloidogyne enterolobii] diamond 996 56.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
31067992 31067992 PRJNA940501_S_NODE_101735_length_237_cov_1.211340_g100917_i0 PRJNA940501 101735 237 1.21134 2.8708758 Haemonchus contortus 6289 Nematoda Nematoda 43.1 0.0243   NR CDJ91656.1 6289 g100917 i0 42.6 0.594936708860759 47 26 59.5 1 5 145 40 85 CDJ91656.1 BTB:POZ and Kelch repeat type 1 domain containing protein [Haemonchus contortus] diamond 141 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
31099328 31099328 PRJNA940501_S_NODE_53515_length_280_cov_1.763713_g52697_i0 PRJNA940501 53515 280 1.763713 4.9383964 Meloidogyne graminicola 189291 Nematoda Nematoda 59.7 4.74e-8   NR AVZ46778.1 189291 g52697 i0 50.8 0.653571428571429 61 30 65.4 0 279 97 184 244 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 183 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31130734 31130734 PRJNA940501_S_NODE_114035_length_229_cov_1.967742_g113217_i0 PRJNA940501 114035 229 1.967742 4.50612918 Trichuris suis 68888 Nematoda Nematoda 53.9 3.53e-6   NR KHJ42466.1 68888 g113217 i0 45.5 2.90829694323144 55 24 72.1 2 166 2 83 131 KHJ42466.1 hypothetical protein D918_07388 [Trichuris suis] diamond 666 53.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
31327547 31327547 PRJNA940501_S_NODE_329115_length_161_cov_1.991525_g328297_i0 PRJNA940501 329115 161 1.991525 3.20635525 Trichinella 6333 Nematoda Nematoda 63.2 5.15e-11   NR KAL1284114.1 6337 g328297 i0 55 4.67701863354037 40 18 74.5 0 5 124 50 89 KAL1284114.1 E3 ubiquitin-protein ligase Iruka [Trichinella pseudospiralis] diamond 753 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
31415678 31415678 PRJNA940501_S_NODE_399276_length_150_cov_1.242991_g398458_i0 PRJNA940501 399276 150 1.242991 1.8644865 Pristionchus entomophagus 358040 Nematoda Nematoda 47 2.34e-4   NR GMS84508.1 358040 g398458 i0 48.6 0.7 35 18 70 0 149 45 160 194 GMS84508.1 hypothetical protein PENTCL1PPCAC_6683, partial [Pristionchus entomophagus] diamond 105 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
31605461 31605461 PRJNA940501_S_NODE_160976_length_207_cov_1.146341_g160158_i0 PRJNA940501 160976 207 1.146341 2.37292587 Trichuris trichiura 36087 Nematoda Nematoda 62.4 2.69e-9   NR CDW53743.1 36087 g160158 i0 46.5 4.11594202898551 71 24 82.6 1 2 172 731 801 CDW53743.1 RVT 1 and Peptidase A17 and DUF1758 domain contai ning protein [Trichuris trichiura] diamond 852 62.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
32175087 32175087 PRJNA940501_S_NODE_78298_length_254_cov_1.796209_g77480_i0 PRJNA940501 78298 254 1.796209 4.56237086 Meloidogyne graminicola 189291 Nematoda Nematoda 58.2 1.24e-7   NR AVZ46778.1 189291 g77480 i0 51.5 0.779527559055118 66 32 78 0 55 252 117 182 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 198 58.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
32340138 32340138 PRJNA940501_S_NODE_63639_length_268_cov_1.862222_g62821_i0 PRJNA940501 63639 268 1.862222 4.99075496 root 1 Root_unresolved Root_unresolved 50.1 9e-5   NR CAD2160182.1 390850 g62821 i0 50 1.17537313432836 36 18 40.3 0 2 109 177 212 CAD2160182.1 unnamed protein product [Meloidogyne enterolobii] diamond 315 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
32459750 32459750 PRJNA940501_S_NODE_23899_length_345_cov_2.811258_g23081_i0 PRJNA940501 23899 345 2.811258 9.6988401 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 43.9 0.0431   NR CAD5231499.1 6326 g23081 i0 54.8 0.269565217391304 31 14 27 0 45 137 27 57 CAD5231499.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 93 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
32491435 32491435 PRJNA940501_S_NODE_197179_length_194_cov_1.245033_g196361_i0 PRJNA940501 197179 194 1.245033 2.41536402 Litomosoides sigmodontis 42156 Nematoda Nematoda 58.2 6.73e-8   NR VDK84305.1 42156 g196361 i0 74.2 3.57216494845361 31 8 47.9 0 194 102 308 338 VDK84305.1 unnamed protein product [Litomosoides sigmodontis] diamond 693 58.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Litomosoides Litomosoides sigmodontis
32774897 32774897 PRJNA940501_S_NODE_17280_length_380_cov_4.059347_g16464_i0 PRJNA940501 17280 380 4.059347 15.4255186 Caenorhabditis elegans 6239 Nematoda Nematoda 62 2.96e-8   NR NP_001380015.1 6239 g16464 i0 41.5 0.647368421052632 82 41 63.9 3 3 245 415 490 NP_001380015.1 Pre-mRNA-processing factor 19 [Caenorhabditis elegans] diamond 246 62 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;