RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA940501" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA940501 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27625661 27625661 PRJNA940501_S_NODE_67264_length_264_cov_2.217195_g66446_i0 PRJNA940501 67264 264 2.217195 5.8533948 Candidatus Neptunochlamydia sp. REUL1 3064277 Bacteria Bacteria 41.6 0.0232   NR WP_316359301.1 3064277 g66446 i0 29.6 0.613636363636364 54 38 61.4 0 80 241 7 60 WP_316359301.1 hypothetical protein [Candidatus Neptunochlamydia sp. REUL1] diamond 162 41.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia sp. REUL1
29740676 29740676 PRJNA940501_S_NODE_289450_length_169_cov_2.293651_g288632_i0 PRJNA940501 289450 169 2.293651 3.87627019 Simkaniaceae bacterium 2698248 Bacteria Bacteria 51.6 9.77e-6   NR MBP9842013.1 2698248 g288632 i0 43.5 1.6508875739645 46 26 81.7 0 30 167 329 374 MBP9842013.1 class I SAM-dependent rRNA methyltransferase [Simkaniaceae bacterium] diamond 279 51.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium
31106180 31106180 PRJNA940501_S_NODE_196695_length_194_cov_1.430464_g195877_i0 PRJNA940501 196695 194 1.430464 2.77510016 Bacteria 2 Bacteria Bacteria 42 0.0367   NR MBT3394618.1 2026802 g195877 i0 39 1.28350515463918 41 24 61.9 1 124 5 489 529 MBT3394618.1 CTP synthase [Waddliaceae bacterium] diamond 249 42.4 0.990566037735849 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
31130740 31130740 PRJNA940501_S_NODE_136255_length_218_cov_1.074286_g135437_i0 PRJNA940501 136255 218 1.074286 2.34194348 Simkaniaceae bacterium 2698248 Bacteria Bacteria 43.1 0.0182   NR QVL57831.1 2698248 g135437 i0 42.6 0.646788990825688 47 27 64.7 0 217 77 203 249 QVL57831.1 MAG: DUF268 domain-containing protein [Simkaniaceae bacterium] diamond 141 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium
32206526 32206526 PRJNA940501_S_NODE_138038_length_217_cov_1.350575_g137220_i0 PRJNA940501 138038 217 1.350575 2.93074775 Chlamydia trachomatis 813 Bacteria Bacteria 42 0.0362   NR CRH63040.1 813 g137220 i0 37.7 0.953917050691244 69 31 78.8 1 21 191 27 95 CRH63040.1 Uncharacterised protein [Chlamydia trachomatis] diamond 207 42 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
32340135 32340135 PRJNA940501_S_NODE_237279_length_182_cov_1.352518_g236461_i0 PRJNA940501 237279 182 1.352518 2.46158276 Pseudomonadati 3379134 Bacteria Bacteria 42.4 0.00531   NR HEY4832333.1 2026802 g236461 i0 44.8 1.61538461538462 58 31 95.6 1 5 178 29 85 HEY4832333.1 NADH-quinone oxidoreductase subunit K [Waddliaceae bacterium] diamond 294 42.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;