RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA939415" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA939415 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7294464 7294464 PRJNA939415_P_NODE_86506_length_248_cov_2.594286_g86084_i0 PRJNA939415 86506 248 2.594286 6.43382928 Fusobacterium 848 Bacteria Bacteria 74.7 2.03e-13   NR WP_249526370.1 851 g86084 i0 62.5 2.90322580645161 80 25 90.7 2 248 24 141 220 WP_249526370.1 CEACAM-binding trimeric autotransporter adhesin CbpF [Fusobacterium nucleatum] diamond 720 75.1 0.994673768308922 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
29431745 29431745 PRJNA939415_P_NODE_29269_length_310_cov_3.392405_g28847_i0 PRJNA939415 29269 310 3.392405 10.5164555 Leptotrichiaceae 1129771 Bacteria Bacteria 95.9 1.18e-20   NR WP_006806971.1 157692 g28847 i0 93.8 0.938709677419355 48 3 46.5 0 162 305 129 176 WP_006806971.1 PTS ascorbate transporter subunit IIC [Pseudoleptotrichia goodfellowii] diamond 291 95.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;