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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA939370" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 32 ✖

tax_kingdom 1

bioproject 1

  • PRJNA939370 · 32 ✖

analysis 1

  • diamond · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3465487 3465487 PRJNA939370_S_NODE_2803_length_167_cov_0.864407_g2751_i0 PRJNA939370 2803 167 0.864407 1.44355969 Brevundimonas diminuta 293 Bacteria Bacteria 100 8.229999999999999e-23   NR WP_128115718.1 293 g2751 i0 98.2 0.988023952095808 55 1 98.8 0 165 1 396 450 WP_128115718.1 PAS domain S-box protein [Brevundimonas diminuta] diamond 165 100 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas diminuta
13668298 13668298 PRJNA939370_S_NODE_3131_length_163_cov_0.868421_g3079_i0 PRJNA939370 3131 163 0.868421 1.41552623 Limnobacter 131079 Bacteria Bacteria 108 5.27e-26   NR WP_130556633.1 131080 g3079 i0 98.1 14.6319018404908 53 1 97.5 0 3 161 277 329 WP_130556633.1 dihydrolipoyl dehydrogenase [Limnobacter thiooxidans] diamond 2385 109 0.990825688073395 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter thiooxidans
14942585 14942585 PRJNA939370_S_NODE_2792_length_167_cov_0.889831_g2740_i0 PRJNA939370 2792 167 0.889831 1.48601777 Pseudomonadota 1224 Bacteria Bacteria 117 3.8999999999999996e-32   NR MFP5481719.1 1913989 g2740 i0 100 1.97604790419162 55 0 98.8 0 3 167 23 77 MFP5481719.1 hypothetical protein [Gammaproteobacteria bacterium] diamond 330 117 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria       Gammaproteobacteria bacterium
18766428 18766428 PRJNA939370_S_NODE_2815_length_167_cov_0.864407_g2763_i0 PRJNA939370 2815 167 0.864407 1.44355969 Brevundimonas sp. SPF441 2663795 Bacteria Bacteria 59.7 2.39e-9   NR WP_153923424.1 2663795 g2763 i0 58.2 0.988023952095808 55 20 98.8 2 167 3 43 94 WP_153923424.1 hypothetical protein [Brevundimonas sp. SPF441] diamond 165 59.7 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. SPF441
27056710 27056710 PRJNA939370_S_NODE_3262_length_161_cov_1.107143_g3210_i0 PRJNA939370 3262 161 1.107143 1.78250023 Acinetobacter junii 40215 Bacteria Bacteria 56.2 7.49e-8   NR WP_125318317.1 40215 g3210 i0 100 1.86335403726708 25 0 46.6 0 2 76 155 179 WP_125318317.1 hypothetical protein [Acinetobacter junii] diamond 300 56.2 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii
27411551 27411551 PRJNA939370_S_NODE_3203_length_162_cov_0.902655_g3151_i0 PRJNA939370 3203 162 0.902655 1.4623011 Limnobacter 131079 Bacteria Bacteria 108 2.99e-26   NR WP_294885534.1 199681 g3151 i0 98.1 2.94444444444444 53 1 98.1 0 161 3 50 102 WP_294885534.1 hypothetical protein [uncultured Limnobacter sp.] diamond 477 108 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter uncultured Limnobacter sp.
27600923 27600923 PRJNA939370_S_NODE_1684_length_211_cov_1.074074_g1632_i0 PRJNA939370 1684 211 1.074074 2.26629614 Limnobacter 131079 Bacteria Bacteria 132 1.74e-34   NR WP_156799645.1 391597 g1632 i0 95.7 1.96208530805687 69 3 98.1 0 3 209 139 207 WP_156799645.1 hypothetical protein [Limnobacter sp. MED105] diamond 414 132 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter sp. MED105
27727414 27727414 PRJNA939370_S_NODE_3284_length_161_cov_0.910714_g3232_i0 PRJNA939370 3284 161 0.910714 1.46624954 Limnobacter 131079 Bacteria Bacteria 112 2.4599999999999996e-29   NR WP_294886936.1 199681 g3232 i0 100 1.97515527950311 53 0 98.8 0 1 159 31 83 WP_294886936.1 CsgG/HfaB family protein, partial [uncultured Limnobacter sp.] diamond 318 112 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter uncultured Limnobacter sp.
27972619 27972619 PRJNA939370_S_NODE_2785_length_167_cov_0.966102_g2733_i0 PRJNA939370 2785 167 0.966102 1.61339034 Craurococcus roseus 77585 Bacteria Bacteria 50.1 3.42e-5   NR WP_343896112.1 77585 g2733 i0 100 0.898203592814371 25 0 44.9 0 3 77 368 392 WP_343896112.1 vWA domain-containing protein [Craurococcus roseus] diamond 150 50.1 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Craurococcus Craurococcus roseus
28193443 28193443 PRJNA939370_S_NODE_3086_length_163_cov_1.061404_g3034_i0 PRJNA939370 3086 163 1.061404 1.73008852 Limnobacter sp. 2003368 Bacteria Bacteria 126 3.39e-32   NR WP_294886309.1 2003368 g3034 i0 98.1 0.993865030674847 54 1 99.4 0 163 2 281 334 WP_294886309.1 PQQ-dependent methanol/ethanol family dehydrogenase [Limnobacter sp.] diamond 162 126 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter sp.
28446363 28446363 PRJNA939370_S_NODE_3306_length_161_cov_0.910714_g3254_i0 PRJNA939370 3306 161 0.910714 1.46624954 unclassified Limnobacter 2630203 Bacteria Bacteria 109 5.28e-27   NR WP_291715049.1 2630203 g3254 i0 98.1 1.97515527950311 53 1 98.8 0 2 160 233 285 WP_291715049.1 MULTISPECIES: extracellular solute-binding protein [unclassified Limnobacter] diamond 318 109 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter  
28793392 28793392 PRJNA939370_S_NODE_2887_length_166_cov_0.871795_g2835_i0 PRJNA939370 2887 166 0.871795 1.4471797 unclassified Limnobacter 2630203 Bacteria Bacteria 95.9 1.32e-23   NR WP_291746651.1 2630203 g2835 i0 96.4 0.993975903614458 55 2 99.4 0 165 1 78 132 WP_291746651.1 MULTISPECIES: protein TolR [unclassified Limnobacter] diamond 165 95.9 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter  
28983226 28983226 PRJNA939370_S_NODE_2968_length_165_cov_0.879310_g2916_i0 PRJNA939370 2968 165 0.87931 1.4508615 Acinetobacter junii 40215 Bacteria Bacteria 81.6 2.46e-16   NR WP_262578713.1 40215 g2916 i0 72 1.81818181818182 50 14 90.9 0 152 3 59 108 WP_262578713.1 hypothetical protein [Acinetobacter junii] diamond 300 81.6 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii
29961855 29961855 PRJNA939370_S_NODE_2971_length_165_cov_0.879310_g2919_i0 PRJNA939370 2971 165 0.87931 1.4508615 Sphingomonadales bacterium 1978525 Bacteria Bacteria 42.4 0.0178   NR MEI6487042.1 1978525 g2919 i0 47.1 1.89090909090909 51 26 90.9 1 9 158 258 308 MEI6487042.1 PAS domain-containing protein [Sphingomonadales bacterium] diamond 312 42.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales     Sphingomonadales bacterium
30182968 30182968 PRJNA939370_S_NODE_752_length_337_cov_4.979167_g700_i0 PRJNA939370 752 337 4.979167 16.77979279 Acinetobacter junii 40215 Bacteria Bacteria 206 1.82e-64   NR WP_151830259.1 40215 g700 i0 100 7.90504451038576 111 0 98.8 0 335 3 55 165 WP_151830259.1 Ig-like domain-containing protein, partial [Acinetobacter junii] diamond 2664 206 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii
30214437 30214437 PRJNA939370_S_NODE_3192_length_162_cov_0.902655_g3140_i0 PRJNA939370 3192 162 0.902655 1.4623011 Pseudomonas monteilii 76759 Bacteria Bacteria 122 1.1000000000000001e-30   NR WP_119370432.1 76759 g3140 i0 98.1 1 54 1 100 0 162 1 204 257 WP_119370432.1 PQQ-dependent dehydrogenase, methanol/ethanol family [Pseudomonas monteilii] diamond 162 122 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas monteilii
30498999 30498999 PRJNA939370_S_NODE_3013_length_164_cov_1.078261_g2961_i0 PRJNA939370 3013 164 1.078261 1.76834804 Limnobacter 131079 Bacteria Bacteria 108 2.99e-28   NR WP_171098585.1 131079 g2961 i0 98.1 0.98780487804878 54 1 98.8 0 164 3 21 74 WP_171098585.1 MULTISPECIES: gamma carbonic anhydrase family protein [Limnobacter] diamond 162 108 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter  
30688389 30688389 PRJNA939370_S_NODE_3173_length_162_cov_0.911504_g3121_i0 PRJNA939370 3173 162 0.911504 1.47663648 Limnobacter sp. 13 2003368 Bacteria Bacteria 105 1.36e-25   NR WP_159570092.1 2653147 g3121 i0 92.5 0.981481481481482 53 4 98.1 0 3 161 273 325 WP_159570092.1 DUF2804 domain-containing protein [Limnobacter sp. 130] diamond 159 105 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter sp. 130
30948486 30948486 PRJNA939370_S_NODE_3254_length_161_cov_1.205357_g3202_i0 PRJNA939370 3254 161 1.205357 1.94062477 Tepidimonas 114248 Bacteria Bacteria 108 1.13e-26   NR WP_082007590.1 307486 g3202 i0 94.3 2.96273291925466 53 3 98.8 0 3 161 209 261 WP_082007590.1 alpha/beta hydrolase [Tepidimonas taiwanensis] diamond 477 109 0.990825688073395 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales   Tepidimonas Tepidimonas taiwanensis
31004521 31004521 PRJNA939370_S_NODE_2974_length_165_cov_0.879310_g2922_i0 PRJNA939370 2974 165 0.87931 1.4508615 Limnobacter sp. 2003368 Bacteria Bacteria 103 2.89e-24   NR HAV74574.1 2003368 g2922 i0 96.3 0.981818181818182 54 2 98.2 0 164 3 67 120 HAV74574.1 aldehyde ferredoxin oxidoreductase [Limnobacter sp.] diamond 162 103 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter sp.
31099123 31099123 PRJNA939370_S_NODE_3195_length_162_cov_0.902655_g3143_i0 PRJNA939370 3195 162 0.902655 1.4623011 uncultured Limnobacter sp. 199681 Bacteria Bacteria 109 2.29e-26   NR WP_294889717.1 199681 g3143 i0 98.1 1.96296296296296 53 1 98.1 0 3 161 72 124 WP_294889717.1 hypothetical protein [uncultured Limnobacter sp.] diamond 318 109 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter uncultured Limnobacter sp.
31257265 31257265 PRJNA939370_S_NODE_3095_length_163_cov_0.912281_g3043_i0 PRJNA939370 3095 163 0.912281 1.48701803 Craurococcus roseus 77585 Bacteria Bacteria 102 9.029999999999999e-24   NR WP_343898292.1 77585 g3043 i0 92 0.920245398773006 50 4 92 0 12 161 1 50 WP_343898292.1 isocitrate lyase [Craurococcus roseus] diamond 150 102 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Craurococcus Craurococcus roseus
31264332 31264332 PRJNA939370_S_NODE_1595_length_217_cov_1.178571_g1543_i0 PRJNA939370 1595 217 1.178571 2.55749907 Limnobacter 131079 Bacteria Bacteria 115 2.41e-30   NR MFN7504318.1 2003368 g1543 i0 98.2 4.64516129032258 56 1 77.4 0 216 49 145 200 MFN7504318.1 formyltetrahydrofolate deformylase [Limnobacter sp.] diamond 1008 115 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter sp.
31415452 31415452 PRJNA939370_S_NODE_2956_length_165_cov_0.879310_g2904_i0 PRJNA939370 2956 165 0.87931 1.4508615 Limnobacter sp. 2003368 Bacteria Bacteria 112 2.26e-29   NR MFN7505816.1 2003368 g2904 i0 90.7 2.94545454545455 54 5 98.2 0 165 4 18 71 MFN7505816.1 MBL fold metallo-hydrolase [Limnobacter sp.] diamond 486 112 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter sp.
31763360 31763360 PRJNA939370_S_NODE_2977_length_165_cov_0.879310_g2925_i0 PRJNA939370 2977 165 0.87931 1.4508615 Sphingomonas 13687 Bacteria Bacteria 77.8 3.02e-15   NR WP_066689141.1 13687 g2925 i0 92.7 0.745454545454545 41 3 74.5 0 124 2 97 137 WP_066689141.1 MULTISPECIES: endolytic transglycosylase MltG [Sphingomonas] diamond 123 77.8 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas  
31794772 31794772 PRJNA939370_S_NODE_3017_length_164_cov_0.886957_g2965_i0 PRJNA939370 3017 164 0.886957 1.45460948 Rhodobacter kunshanensis 2583234 Bacteria Bacteria 104 2.5599999999999994e-24   NR WP_165052265.1 2583234 g2965 i0 98.1 2.96341463414634 54 1 98.8 0 163 2 226 279 WP_165052265.1 hypothetical protein [Rhodobacter kunshanensis] diamond 486 104 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paragemmobacter Paragemmobacter kunshanensis
32150115 32150115 PRJNA939370_S_NODE_2398_length_177_cov_0.945312_g2346_i0 PRJNA939370 2398 177 0.945312 1.67320224 Limnobacter 131079 Bacteria Bacteria 113 1.96e-28   NR WP_130556670.1 131080 g2346 i0 82.8 2.94915254237288 58 10 98.3 0 176 3 69 126 WP_130556670.1 alpha/beta fold hydrolase [Limnobacter thiooxidans] diamond 522 113 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter thiooxidans
32333232 32333232 PRJNA939370_S_NODE_3159_length_162_cov_1.300885_g3107_i0 PRJNA939370 3159 162 1.300885 2.1074337 Agrobacterium sp. 361 Bacteria Bacteria 49.7 2.6e-6   NR HCD83684.1 361 g3107 i0 62.7 1.83333333333333 51 19 94.4 0 3 155 10 60 HCD83684.1 hypothetical protein [Agrobacterium sp.] diamond 297 49.7 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp.
32523011 32523011 PRJNA939370_S_NODE_3299_length_161_cov_0.910714_g3247_i0 PRJNA939370 3299 161 0.910714 1.46624954 Limnobacter 131079 Bacteria Bacteria 110 1.27e-26   NR WP_171099359.1 131079 g3247 i0 92.5 0.987577639751553 53 4 98.8 0 160 2 110 162 WP_171099359.1 MULTISPECIES: 3-(methylthio)propionyl-CoA ligase [Limnobacter] diamond 159 110 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter  
32561633 32561633 PRJNA939370_S_NODE_2799_length_167_cov_0.864407_g2747_i0 PRJNA939370 2799 167 0.864407 1.44355969 Pseudomonadota 1224 Bacteria Bacteria 102 5.99e-26   NR MFP5482071.1 1913989 g2747 i0 92.7 1.97604790419162 55 4 98.8 0 3 167 28 82 MFP5482071.1 DUF1415 domain-containing protein [Gammaproteobacteria bacterium] diamond 330 102 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria       Gammaproteobacteria bacterium
32711809 32711809 PRJNA939370_S_NODE_3080_length_163_cov_1.175439_g3028_i0 PRJNA939370 3080 163 1.175439 1.91596557 Vibrio vulnificus 672 Bacteria Bacteria 97.4 4.88e-25   NR WP_413761080.1 672 g3028 i0 88.9 0.993865030674847 54 6 99.4 0 2 163 13 66 WP_413761080.1 hypothetical protein, partial [Vibrio vulnificus] diamond 162 97.4 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus
32900652 32900652 PRJNA939370_S_NODE_3200_length_162_cov_0.902655_g3148_i0 PRJNA939370 3200 162 0.902655 1.4623011 unclassified Brevundimonas 2622653 Bacteria Bacteria 87.4 5.46e-21   NR WP_292019526.1 2622653 g3148 i0 95.7 0.851851851851852 46 2 85.2 0 25 162 1 46 WP_292019526.1 MULTISPECIES: DUF333 domain-containing protein [unclassified Brevundimonas] diamond 138 87.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;