RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA939370" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA939370 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18766429 18766429 PRJNA939370_S_NODE_2875_length_166_cov_0.871795_g2823_i0 PRJNA939370 2875 166 0.871795 1.4471797 Clostridia 186801 Bacteria Bacteria 93.6 1.62e-20   NR KKM11735.1 1605376 g2823 i0 87.3 6.95783132530121 55 7 99.4 0 166 2 497 551 KKM11735.1 hypothetical protein SY88_07335 [Clostridiales bacterium PH28_bin88] diamond 1155 93.6 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium PH28_bin88
31478899 31478899 PRJNA939370_S_NODE_2076_length_190_cov_0.943262_g2024_i0 PRJNA939370 2076 190 0.943262 1.7921978 Limosilactobacillus ingluviei 148604 Bacteria Bacteria 132 2.6699999999999996e-35   NR WP_019206338.1 148604 g2024 i0 98.4 0.994736842105263 63 1 99.5 0 2 190 178 240 WP_019206338.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB [Limosilactobacillus ingluviei] diamond 189 132 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus ingluviei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;