RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA939370" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA939370 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29645613 29645613 PRJNA939370_S_NODE_2610_length_171_cov_0.885246_g2558_i0 PRJNA939370 2610 171 0.885246 1.51377066 Actinomycetota bacterium 2900548 Bacteria Bacteria 42 0.0278   NR HEX6231432.1 2900548 g2558 i0 43.2 0.771929824561403 44 25 77.2 0 37 168 426 469 HEX6231432.1 PAS domain S-box protein [Actinomycetota bacterium] diamond 132 42 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32048143 32048143 PRJNA939370_S_NODE_2978_length_165_cov_0.879310_g2926_i0 PRJNA939370 2978 165 0.87931 1.4508615 Corynebacterium suicordis 203264 Bacteria Bacteria 110 1.7700000000000002e-26   NR WP_194557199.1 203264 g2926 i0 100 0.981818181818182 54 0 98.2 0 164 3 1405 1458 WP_194557199.1 polyketide synthase Pks13 [Corynebacterium suicordis] diamond 162 110 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium suicordis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;