RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA939370" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA939370 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28446362 28446362 PRJNA939370_S_NODE_1926_length_197_cov_1.020270_g1874_i0 PRJNA939370 1926 197 1.02027 2.0099319 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 65.9 1.42e-10   NR PRP87877.1 1890364 g1874 i0 65.1 0.654822335025381 43 15 65.5 0 2 130 580 622 PRP87877.1 hypothetical protein PROFUN_02614 [Planoprotostelium fungivorum] diamond 129 65.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29519681 29519681 PRJNA939370_S_NODE_3090_length_163_cov_1.052632_g3038_i0 PRJNA939370 3090 163 1.052632 1.71579016 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 64.7 7.18e-11   NR PRP81360.1 1890364 g3038 i0 66.7 0.938650306748466 51 17 93.9 0 162 10 98 148 PRP81360.1 ribosomal protein L13 [Planoprotostelium fungivorum] diamond 153 64.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29551120 29551120 PRJNA939370_S_NODE_2810_length_167_cov_0.864407_g2758_i0 PRJNA939370 2810 167 0.864407 1.44355969 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 61.2 4.04e-10   NR PRP83749.1 1890364 g2758 i0 70.9 0.988023952095808 55 5 79 1 159 28 36 90 PRP83749.1 hypothetical protein PROFUN_09081 [Planoprotostelium fungivorum] diamond 165 61.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32427878 32427878 PRJNA939370_S_NODE_2979_length_165_cov_0.879310_g2927_i0 PRJNA939370 2979 165 0.87931 1.4508615 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 63.2 4.4e-10   NR PRP76094.1 1890364 g2927 i0 53.7 0.981818181818182 54 25 98.2 0 164 3 38 91 PRP76094.1 programmed cell death 6 protein-like protein [Planoprotostelium fungivorum] diamond 162 63.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;