RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA939369" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA939369 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26968632 26968632 PRJNA939369_S_NODE_31162_length_297_cov_2.714286_g30745_i0 PRJNA939369 31162 297 2.714286 8.06142942 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 77.4 4.45e-16   NR AID23594.1 2850 g30745 i0 91.9 0.747474747474748 37 3 37.4 0 295 185 63 99 AID23594.1 ubiquitin-ribosomal protein fusion S27a, partial [Phaeodactylum tricornutum] diamond 222 77.4 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
32743443 32743443 PRJNA939369_S_NODE_25440_length_315_cov_1.272727_g25023_i0 PRJNA939369 25440 315 1.272727 4.00909005 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 146 4.05e-43   NR AID23596.1 2850 g25023 i0 76.3 0.885714285714286 93 22 88.6 0 2 280 25 117 AID23596.1 putative voltage-dependent anion-selective channel protein, partial [Phaeodactylum tricornutum] diamond 279 146 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;