RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA939369" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 9 ✖

bioproject 1

  • PRJNA939369 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27309678 27309678 PRJNA939369_S_NODE_31623_length_296_cov_1.538117_g31206_i0 PRJNA939369 31623 296 1.538117 4.55282632 Synergistales bacterium 2268201 Bacteria Bacteria 47 0.0021   NR MDY6411342.1 2268201 g31206 i0 40.4 2.12837837837838 57 34 57.8 0 2 172 297 353 MDY6411342.1 replication initiation protein [Synergistales bacterium] diamond 630 47 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium
28667372 28667372 PRJNA939369_S_NODE_47527_length_262_cov_1.222222_g47110_i0 PRJNA939369 47527 262 1.222222 3.20222164 Synergistaceae bacterium 2053624 Bacteria Bacteria 42.7 0.0348   NR MBQ2616560.1 2053624 g47110 i0 33.8 0.778625954198473 68 45 77.9 0 1 204 128 195 MBQ2616560.1 hypothetical protein [Synergistaceae bacterium] diamond 204 42.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
28761840 28761840 PRJNA939369_S_NODE_54167_length_251_cov_2.028090_g53750_i0 PRJNA939369 54167 251 2.02809 5.0905059 Thermus oshimai 56957 Bacteria Bacteria 86.3 5.4e-20   NR GAA6741988.1 56957 g53750 i0 60.6 0.788844621513944 66 26 78.9 0 224 27 19 84 GAA6741988.1 hypothetical protein Thermus77359_21750 [Thermus oshimai] diamond 198 86.3 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai
29109410 29109410 PRJNA939369_S_NODE_65828_length_246_cov_0.890173_g65411_i0 PRJNA939369 65828 246 0.890173 2.18982558 Synergistaceae bacterium 2053624 Bacteria Bacteria 164 4.11e-50   NR MBQ2617265.1 2053624 g65411 i0 100 1.98780487804878 81 0 98.8 0 1 243 13 93 MBQ2617265.1 PIN domain-containing protein [Synergistaceae bacterium] diamond 489 164 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30088120 30088120 PRJNA939369_S_NODE_24432_length_319_cov_0.926829_g24015_i0 PRJNA939369 24432 319 0.926829 2.95658451 Synergistaceae bacterium 2053624 Bacteria Bacteria 102 9.12e-26   NR MBQ2616871.1 2053624 g24015 i0 72.3 4.44827586206897 65 18 61.1 0 111 305 1 65 MBQ2616871.1 winged helix-turn-helix transcriptional regulator [Synergistaceae bacterium] diamond 1419 102 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30246399 30246399 PRJNA939369_S_NODE_8312_length_452_cov_1.910290_g7895_i0 PRJNA939369 8312 452 1.91029 8.6345108 Synergistaceae bacterium 2053624 Bacteria Bacteria 117 1.6699999999999999e-31   NR MBQ9903313.1 2053624 g7895 i0 83.6 0.484513274336283 73 12 48.5 0 49 267 2 74 MBQ9903313.1 hypothetical protein [Synergistaceae bacterium] diamond 219 117 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30278141 30278141 PRJNA939369_S_NODE_64532_length_246_cov_1.606936_g64115_i0 PRJNA939369 64532 246 1.606936 3.95306256 Synergistaceae bacterium 2053624 Bacteria Bacteria 133 8.28e-37   NR MEG1502472.1 2053624 g64115 i0 71.6 3.95121951219512 81 23 98.8 0 245 3 71 151 MEG1502472.1 site-specific DNA-methyltransferase [Synergistaceae bacterium] diamond 972 133 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30846526 30846526 PRJNA939369_S_NODE_59394_length_249_cov_0.875000_g58977_i0 PRJNA939369 59394 249 0.875 2.17875 Synergistaceae bacterium 2053624 Bacteria Bacteria 187 2.3699999999999997e-56   NR MBR0035599.1 2053624 g58977 i0 96.3 0.987951807228916 82 3 98.8 0 3 248 96 177 MBR0035599.1 hypothetical protein [Synergistaceae bacterium] diamond 246 187 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32491251 32491251 PRJNA939369_S_NODE_73979_length_242_cov_0.911243_g73562_i0 PRJNA939369 73979 242 0.911243 2.20520806 Synergistaceae bacterium 2053624 Bacteria Bacteria 145 1.2899999999999999e-38   NR MBQ3758656.1 2053624 g73562 i0 93.8 3.96694214876033 80 5 99.2 0 2 241 534 613 MBQ3758656.1 hypothetical protein [Synergistaceae bacterium] diamond 960 145 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;