RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA939369" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA939369 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26866994 26866994 PRJNA939369_S_NODE_22901_length_324_cov_5.541833_g22484_i0 PRJNA939369 22901 324 5.541833 17.95553892 Gammaretrovirus murleu 3428959 Viruses Viruses 224 3.81e-69   NR 8WUS_E 11801 g22484 i0 100 7.92592592592593 107 0 99.1 0 2 322 152 258 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 2568 224 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29740478 29740478 PRJNA939369_S_NODE_2990_length_660_cov_3.524702_g2593_i0 PRJNA939369 2990 660 3.524702 23.2630332 Moloney murine leukemia virus 11801 Viruses Viruses 424 2.89e-134   NR NP_057933.2 11801 g2593 i0 98.2 0.995454545454545 219 4 99.5 0 2 658 1111 1329 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 657 424 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
32648556 32648556 PRJNA939369_S_NODE_78460_length_230_cov_3.605096_g78043_i0 PRJNA939369 78460 230 3.605096 8.2917208 Gammaretrovirus murleu 3428959 Viruses Viruses 154 1.1899999999999997e-42   NR 8WUS_E 11801 g78043 i0 98.7 5.94782608695652 76 1 99.1 0 2 229 252 327 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 1368 154 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;