RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA938397" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA938397 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30751780 30751780 PRJNA938397_S_NODE_15174_length_281_cov_18.754098_g14933_i0 PRJNA938397 15174 281 18.754098 52.69901538 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 47.8 1.39e-4   NR XP_067764445.1 348837 g14933 i0 36.2 0.736654804270463 69 44 73.7 0 5 211 27 95 XP_067764445.1 Dynein light chain [Spironucleus salmonicida] diamond 207 47.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
31605275 31605275 PRJNA938397_S_NODE_11356_length_319_cov_13.872340_g11115_i0 PRJNA938397 11356 319 13.87234 44.2527646 Streblomastix strix 222440 Preaxostyla other_Eukaryota 50.8 1.27e-4   NR KAA6389595.1 222440 g11115 i0 40 1.2884012539185 70 42 65.8 0 318 109 340 409 KAA6389595.1 MAG: putative ubiquitin 4 [Streblomastix strix] diamond 411 50.8 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Streblomastigidae Streblomastix Streblomastix strix
32561628 32561628 PRJNA938397_S_NODE_26019_length_216_cov_9.832402_g25778_i0 PRJNA938397 26019 216 9.832402 21.23798832 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.1 5.46e-6   NR XP_001710200.1 5741 g25778 i0 34.2 4.68055555555556 79 43 97.2 2 5 214 463 541 XP_001710200.1 Ankyrin repeat protein 2 [Giardia intestinalis] diamond 1011 53.5 0.992523364485981 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;