RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA937226" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA937226 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26708114 26708114 PRJNA937226_S_NODE_25581_length_168_cov_1.563025_g25454_i0 PRJNA937226 25581 168 1.563025 2.625882 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 62.8 1.36e-10   NR AAX30334.2 6182 g25454 i0 76.2 2.48214285714286 42 10 75 0 167 42 44 85 AAX30334.2 SJCHGC03026 protein, partial [Schistosoma japonicum] diamond 417 62.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28224939 28224939 PRJNA937226_S_NODE_29986_length_156_cov_14.869159_g29859_i0 PRJNA937226 29986 156 14.869159 23.19588804 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 70.1 1.2e-13   NR AAW27122.1 6182 g29859 i0 93.8 0.615384615384615 32 2 61.5 0 3 98 18 49 AAW27122.1 SJCHGC01951 protein [Schistosoma japonicum] diamond 96 70.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
29487944 29487944 PRJNA937226_S_NODE_15650_length_205_cov_1.858974_g15523_i0 PRJNA937226 15650 205 1.858974 3.8108967 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 41.2 0.0238   NR AAW24818.1 6182 g15523 i0 84 0.365853658536585 25 4 36.6 0 1 75 65 89 AAW24818.1 SJCHGC04554 protein, partial [Schistosoma japonicum] diamond 75 41.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;