RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA937226" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA937226 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29077813 29077813 PRJNA937226_S_NODE_9668_length_246_cov_2.111675_g9541_i0 PRJNA937226 9668 246 2.111675 5.1947205 Helicobacter pylori 210 Bacteria Bacteria 56.2 3.11e-8   NR GAA8745658.1 210 g9541 i0 52.1 0.585365853658537 48 23 58.5 0 146 3 4 51 GAA8745658.1 hypothetical protein Kyoto147A_2830 [Helicobacter pylori] diamond 144 56.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29204148 29204148 PRJNA937226_S_NODE_21989_length_178_cov_5.434109_g21862_i0 PRJNA937226 21989 178 5.434109 9.67271402 Helicobacter pylori 210 Bacteria Bacteria 43.9 7.88e-4   NR GAA8685008.1 210 g21862 i0 68 0.421348314606742 25 8 42.1 0 89 163 14 38 GAA8685008.1 hypothetical protein Kyoto145A_1190 [Helicobacter pylori] diamond 75 43.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29204150 29204150 PRJNA937226_S_NODE_8289_length_259_cov_3.714286_g8162_i0 PRJNA937226 8289 259 3.714286 9.62000074 Helicobacter pylori 210 Bacteria Bacteria 40.4 0.0274   NR GAA9013195.1 210 g8162 i0 52.4 0.486486486486487 42 18 48.6 1 193 68 6 45 GAA9013195.1 hypothetical protein Kyoto181A_7250 [Helicobacter pylori] diamond 126 40.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29582519 29582519 PRJNA937226_S_NODE_17950_length_194_cov_1.613793_g17823_i0 PRJNA937226 17950 194 1.613793 3.13075842 Helicobacter pylori 210 Bacteria Bacteria 47.4 2.24e-5   NR GAA8956022.1 210 g17823 i0 52.4 0.649484536082474 42 20 64.9 0 59 184 1 42 GAA8956022.1 hypothetical protein Kyoto181A_3010 [Helicobacter pylori] diamond 126 47.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29993503 29993503 PRJNA937226_S_NODE_24711_length_170_cov_2.148760_g24584_i0 PRJNA937226 24711 170 2.14876 3.652892 Helicobacter pylori 210 Bacteria Bacteria 49.3 7.52e-6   NR GAA8913412.1 210 g24584 i0 55.6 0.794117647058823 45 20 79.4 0 7 141 29 73 GAA8913412.1 hypothetical protein Kyoto166A_2650 [Helicobacter pylori] diamond 135 49.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31320462 31320462 PRJNA937226_S_NODE_10995_length_235_cov_1.763441_g10868_i0 PRJNA937226 10995 235 1.763441 4.14408635 Helicobacter pylori 210 Bacteria Bacteria 52.4 3.98e-6   NR GAA6966708.1 210 g10868 i0 52.2 1.69787234042553 46 22 58.7 0 227 90 39 84 GAA6966708.1 hypothetical protein Kyoto211A_2740 [Helicobacter pylori] diamond 399 52.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32111397 32111397 PRJNA937226_S_NODE_5638_length_295_cov_2.788618_g5511_i0 PRJNA937226 5638 295 2.788618 8.2264231 Helicobacter pylori 210 Bacteria Bacteria 53.1 7.42e-7   NR GAA9043165.1 210 g5511 i0 59 0.691525423728814 39 16 39.7 0 132 248 6 44 GAA9043165.1 hypothetical protein Kyoto184A_02530 [Helicobacter pylori] diamond 204 53.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;