RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934472 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26771797 26771797 PRJNA934472_P_NODE_38901_length_241_cov_0.916667_g38523_i0 PRJNA934472 38901 241 0.916667 2.20916747 Halococcus hamelinensis 332168 Archaea Archaea 60.1 4.57e-10   NR WP_394295090.1 332168 g38523 i0 80 0.435684647302905 35 7 43.6 0 105 1 1 35 WP_394295090.1 homing endonuclease associated repeat-containing protein [Halococcus hamelinensis] diamond 105 60.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus hamelinensis
30309840 30309840 PRJNA934472_P_NODE_38952_length_241_cov_0.916667_g38574_i0 PRJNA934472 38952 241 0.916667 2.20916747 Halococcus hamelinensis 332168 Archaea Archaea 51.6 3.82e-6   NR WP_007695307.1 332168 g38574 i0 63.9 0.448132780082988 36 13 44.8 0 74 181 4 39 WP_007695307.1 DUF5615 family PIN-like protein [Halococcus hamelinensis] diamond 108 51.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus hamelinensis
31130532 31130532 PRJNA934472_P_NODE_39295_length_237_cov_2.195122_g38917_i0 PRJNA934472 39295 237 2.195122 5.20243914 archaeon 1906665 Archaea Archaea 63.2 2.21e-9   NR MCQ2817012.1 1906665 g38917 i0 36.7 1 79 43 100 2 237 1 372 443 MCQ2817012.1 nucleotidyltransferase domain-containing protein [archaeon] diamond 237 63.2 1 Archaea               archaeon
31232464 31232464 PRJNA934472_P_NODE_38935_length_241_cov_0.916667_g38557_i0 PRJNA934472 38935 241 0.916667 2.20916747 Natronorubrum 134813 Archaea Archaea 70.9 3.12e-12   NR WP_241434309.1 63128 g38557 i0 48.7 1.89211618257261 76 39 94.6 0 228 1 241 316 WP_241434309.1 hypothetical protein [Natronorubrum tibetense] diamond 456 70.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum tibetense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;