RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934472 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27593825 27593825 PRJNA934472_P_NODE_35624_length_250_cov_0.870056_g35246_i0 PRJNA934472 35624 250 0.870056 2.17514 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 110 4.54e-26   NR MCB1207841.1 2026801 g35246 i0 61.4 0.996 83 31 99.6 1 2 250 1198 1279 MCB1207841.1 DUF11 domain-containing protein [Verrucomicrobiales bacterium] diamond 249 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
30751762 30751762 PRJNA934472_P_NODE_37814_length_244_cov_0.900585_g37436_i0 PRJNA934472 37814 244 0.900585 2.1974274 Opitutaceae bacterium EW11 2161865 Bacteria Bacteria 45.1 0.00564   NR PTY06334.1 2161865 g37436 i0 47.9 0.590163934426229 48 25 59 0 228 85 39 86 PTY06334.1 hypothetical protein DB347_12955 [Opitutaceae bacterium EW11] diamond 144 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium EW11
32238213 32238213 PRJNA934472_P_NODE_38198_length_243_cov_0.905882_g37820_i0 PRJNA934472 38198 243 0.905882 2.20129326 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 111 1.53e-26   NR HUR40143.1 2499141 g37820 i0 68.8 0.987654320987654 80 25 98.8 0 3 242 105 184 HUR40143.1 polyphosphate:AMP phosphotransferase [Verrucomicrobiia bacterium] diamond 240 111 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;