RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA934472 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26866975 26866975 PRJNA934472_P_NODE_37681_length_244_cov_1.543860_g37303_i0 PRJNA934472 37681 244 1.54386 3.7670184 Archangiaceae bacterium 2684409 Bacteria Bacteria 105 2.86e-24   NR MBM4783105.1 2684409 g37303 i0 80.2 0.995901639344262 81 16 99.6 0 2 244 240 320 MBM4783105.1 hypothetical protein [Archangiaceae bacterium] diamond 243 105 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae   Archangiaceae bacterium
29898721 29898721 PRJNA934472_P_NODE_31011_length_267_cov_1.396907_g30633_i0 PRJNA934472 31011 267 1.396907 3.72974169 Polyangia bacterium 3058050 Bacteria Bacteria 96.3 1.0499999999999999e-23   NR HEX7506017.1 3058050 g30633 i0 92.6 1.84269662921348 54 4 60.7 0 162 1 1 54 HEX7506017.1 cyclic nucleotide-binding domain-containing protein [Polyangia bacterium] diamond 492 96.3 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
30436017 30436017 PRJNA934472_P_NODE_39613_length_233_cov_2.075000_g39235_i0 PRJNA934472 39613 233 2.075 4.83475 Hyalangium sp. 2028555 Bacteria Bacteria 103 4.449999999999999e-24   NR WP_407742696.1 2028555 g39235 i0 58.4 2.93562231759657 77 32 99.1 0 233 3 17 93 WP_407742696.1 amidohydrolase family protein [Hyalangium sp.] diamond 684 103 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium sp.
32016386 32016386 PRJNA934472_P_NODE_37018_length_246_cov_0.890173_g36640_i0 PRJNA934472 37018 246 0.890173 2.18982558 Polyangiaceae bacterium 2268199 Bacteria Bacteria 84.7 3.67e-17   NR HZO15549.1 2268199 g36640 i0 52.1 0.865853658536585 71 33 86.6 1 240 28 262 331 HZO15549.1 hypothetical protein [Polyangiaceae bacterium] diamond 213 84.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;