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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934472 · 19 ✖

analysis 1

  • diamond · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22588115 22588115 PRJNA934472_P_NODE_33258_length_258_cov_1.448649_g32880_i0 PRJNA934472 33258 258 1.448649 3.73751442 Rattus norvegicus 10116 Chordata Chordata 64.3 1.93e-11   NR EDL86969.1 10116 g32880 i0 96.7 0.348837209302326 30 1 34.9 0 9 98 42 71 EDL86969.1 rCG50536 [Rattus norvegicus] diamond 90 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
26644888 26644888 PRJNA934472_P_NODE_10861_length_432_cov_1.097493_g10484_i0 PRJNA934472 10861 432 1.097493 4.74116976 Mus musculus 10090 Chordata Chordata 43.5 0.0346   NR EDL09486.1 10090 g10484 i0 84.2 0.131944444444444 19 3 13.2 0 79 23 28 46 EDL09486.1 mCG147332 [Mus musculus] diamond 57 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26771793 26771793 PRJNA934472_P_NODE_19741_length_327_cov_2.125984_g19364_i0 PRJNA934472 19741 327 2.125984 6.95196768 Nyctereutes procyonoides 34880 Chordata Chordata 57.4 9.81e-8   NR CAD7692826.1 34880 g19364 i0 49.1 0.522935779816514 57 25 52.3 1 104 274 78 130 CAD7692826.1 unnamed protein product [Nyctereutes procyonoides] diamond 171 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
27214444 27214444 PRJNA934472_P_NODE_6722_length_539_cov_1.684549_g6408_i0 PRJNA934472 6722 539 1.684549 9.07971911 Rattus norvegicus 10116 Chordata Chordata 54.7 3.24e-6   NR EDL97532.1 10116 g6408 i0 100 0.128014842300557 23 0 12.8 0 114 46 81 103 EDL97532.1 rCG27612 [Rattus norvegicus] diamond 69 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
27657018 27657018 PRJNA934472_P_NODE_39784_length_231_cov_2.215190_g39406_i0 PRJNA934472 39784 231 2.21519 5.1170889 Muntiacus muntjak 9888 Chordata Chordata 49.3 1.17e-5   NR KAB0344592.1 9888 g39406 i0 72.7 0.428571428571429 33 9 42.9 0 229 131 6 38 KAB0344592.1 hypothetical protein FD754_021518 [Muntiacus muntjak] diamond 99 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
27972568 27972568 PRJNA934472_P_NODE_24305_length_298_cov_0.920000_g23927_i0 PRJNA934472 24305 298 0.92 2.7416 Apodemus speciosus 105296 Chordata Chordata 50.1 1.1e-4   NR GAB1295729.1 105296 g23927 i0 82.8 0.291946308724832 29 5 29.2 0 111 197 99 127 GAB1295729.1 Biogenesis of lysosome-related organelles complex 1 subunit 1 [Apodemus speciosus] diamond 87 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
28042770 28042770 PRJNA934472_P_NODE_22265_length_310_cov_1.426160_g21887_i0 PRJNA934472 22265 310 1.42616 4.421096 root 1 Root_unresolved Root_unresolved 210 5.99e-63   NR XP_030110853.2 10090 g21887 i0 99 15.7935483870968 102 1 98.7 0 308 3 113 214 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 4896 211 0.995260663507109 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29330222 29330222 PRJNA934472_P_NODE_37089_length_246_cov_0.890173_g36711_i0 PRJNA934472 37089 246 0.890173 2.18982558 Staurois parvus 386267 Chordata Chordata 84.3 5.01e-19   NR CAI9618505.1 386267 g36711 i0 46.3 1 82 43 98.8 1 1 243 13 94 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 246 84.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29930398 29930398 PRJNA934472_P_NODE_27971_length_280_cov_1.140097_g27593_i0 PRJNA934472 27971 280 1.140097 3.1922716 Cricetulus griseus 10029 Chordata Chordata 63.2 3.61e-9   NR XP_027243225.1 10029 g27593 i0 57.1 1.2 56 24 60 0 75 242 294 349 XP_027243225.1 Friend virus susceptibility protein 1 [Cricetulus griseus] diamond 336 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30436016 30436016 PRJNA934472_P_NODE_28653_length_277_cov_1.014706_g28275_i0 PRJNA934472 28653 277 1.014706 2.81073562 Rattus norvegicus 10116 Chordata Chordata 189 1.2299999999999999e-60   NR EDM00394.1 10116 g28275 i0 100 0.963898916967509 89 0 96.4 0 270 4 1 89 EDM00394.1 rCG37799, partial [Rattus norvegicus] diamond 267 189 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
30814824 30814824 PRJNA934472_P_NODE_24454_length_297_cov_1.205357_g24076_i0 PRJNA934472 24454 297 1.205357 3.57991029 Rattus norvegicus 10116 Chordata Chordata 117 1.4399999999999999e-32   NR EDL78643.1 10116 g24076 i0 98.2 0.555555555555556 55 1 55.6 0 53 217 1 55 EDL78643.1 rCG55933 [Rattus norvegicus] diamond 165 117 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
31162132 31162132 PRJNA934472_P_NODE_32435_length_261_cov_2.202128_g32057_i0 PRJNA934472 32435 261 2.202128 5.74755408 Rattus norvegicus 10116 Chordata Chordata 53.1 2.02e-7   NR EDL86677.1 10116 g32057 i0 100 0.275862068965517 24 0 27.6 0 158 229 1 24 EDL86677.1 rCG41242, isoform CRA_b [Rattus norvegicus] diamond 72 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
31510459 31510459 PRJNA934472_P_NODE_33756_length_256_cov_1.508197_g33378_i0 PRJNA934472 33756 256 1.508197 3.86098432 Psammomys obesus 48139 Chordata Chordata 45.1 0.00645   NR XP_055469103.1 48139 g33378 i0 41.7 0.5625 48 25 52.7 1 196 62 50 97 XP_055469103.1 diacylglycerol kinase alpha-like isoform X1 [Psammomys obesus] diamond 144 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Psammomys Psammomys obesus
31573740 31573740 PRJNA934472_P_NODE_20536_length_321_cov_2.366935_g20159_i0 PRJNA934472 20536 321 2.366935 7.59786135 Erpetoichthys calabaricus 27687 Chordata Chordata 70.5 1.18e-11   NR XP_051791274.1 27687 g20159 i0 73.5 2.80373831775701 49 12 44.9 1 203 60 156 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 900 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32396218 32396218 PRJNA934472_P_NODE_38799_length_241_cov_1.380952_g38421_i0 PRJNA934472 38799 241 1.380952 3.32809432 Rousettus aegyptiacus 9407 Chordata Chordata 43.5 0.0063   NR KAF6435704.1 9407 g38421 i0 61.3 0.385892116182573 31 12 38.6 0 145 237 1 31 KAF6435704.1 hypothetical protein HJG63_012462 [Rousettus aegyptiacus] diamond 93 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
32522977 32522977 PRJNA934472_P_NODE_13139_length_394_cov_1.289720_g12762_i0 PRJNA934472 13139 394 1.28972 5.0814968 Apodemus speciosus 105296 Chordata Chordata 46.2 0.0112   NR GAB1298786.1 105296 g12762 i0 56.8 0.33502538071066 44 19 33.5 0 139 8 441 484 GAB1298786.1 AP-5 complex subunit mu-1 [Apodemus speciosus] diamond 132 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
32522978 32522978 PRJNA934472_P_NODE_31759_length_264_cov_1.445026_g31381_i0 PRJNA934472 31759 264 1.445026 3.81486864 Cricetulus griseus 10029 Chordata Chordata 40.4 0.0474   NR EGW04989.1 10029 g31381 i0 43.4 0.602272727272727 53 29 59.1 1 183 28 5 57 EGW04989.1 hypothetical protein I79_003494 [Cricetulus griseus] diamond 159 40.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
32586059 32586059 PRJNA934472_P_NODE_34539_length_253_cov_1.750000_g34161_i0 PRJNA934472 34539 253 1.75 4.4275 Cricetulus griseus 10029 Chordata Chordata 56.2 6.38e-7   NR XP_035315827.1 10029 g34161 i0 47.2 1.05533596837945 89 31 99.6 4 253 2 78 155 XP_035315827.1 caskin-2-like [Cricetulus griseus] diamond 267 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
32680060 32680060 PRJNA934472_P_NODE_13460_length_389_cov_3.658228_g13083_i0 PRJNA934472 13460 389 3.658228 14.23050692 Polypterus senegalus 55291 Chordata Chordata 43.5 0.0322   NR KAG2471189.1 55291 g13083 i0 57.1 0.269922879177378 35 15 27 0 188 84 92 126 KAG2471189.1 TCB1 transposase, partial [Polypterus senegalus] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;