RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA934472 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3462092 3462092 PRJNA934472_P_NODE_36003_length_249_cov_0.875000_g35625_i0 PRJNA934472 36003 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 159 2.5999999999999998e-46   NR MBI3164448.1 2026724 g35625 i0 94 16 83 5 100 0 1 249 130 212 MBI3164448.1 UDP-glucose/GDP-mannose dehydrogenase family protein [Chloroflexota bacterium] diamond 3984 160 0.99375 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
26930084 26930084 PRJNA934472_P_NODE_38802_length_241_cov_1.375000_g38424_i0 PRJNA934472 38802 241 1.375 3.31375 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 141 3.39e-39   NR MDO9332913.1 2026733 g38424 i0 80 1.99170124481328 80 16 99.6 0 2 241 13 92 MDO9332913.1 EF-Tu/IF-2/RF-3 family GTPase [Dehalococcoidales bacterium] diamond 480 141 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium
27720457 27720457 PRJNA934472_P_NODE_26444_length_287_cov_1.140187_g26066_i0 PRJNA934472 26444 287 1.140187 3.27233669 Anaerolineales bacterium 2073117 Bacteria Bacteria 50.8 9.26e-5   NR HLC35406.1 2073117 g26066 i0 50 1.73519163763066 74 33 77.4 2 65 286 442 511 HLC35406.1 sortase [Anaerolineales bacterium] diamond 498 50.8 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
30719986 30719986 PRJNA934472_P_NODE_38214_length_243_cov_0.905882_g37836_i0 PRJNA934472 38214 243 0.905882 2.20129326 Caldilineaceae bacterium 2614250 Bacteria Bacteria 45.1 4.18e-4   NR MCC6168563.1 2614250 g37836 i0 56.5 0.567901234567901 46 20 56.8 0 242 105 9 54 MCC6168563.1 DUF1328 domain-containing protein [Caldilineaceae bacterium] diamond 138 45.1 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
30751763 30751763 PRJNA934472_P_NODE_39114_length_239_cov_2.457831_g38736_i0 PRJNA934472 39114 239 2.457831 5.87421609 Bellilinea sp. 2838785 Bacteria Bacteria 165 2.17e-48   NR MEN4013923.1 2838785 g38736 i0 100 0.99163179916318 79 0 99.2 0 239 3 146 224 MEN4013923.1 IS481 family transposase [Bellilinea sp.] diamond 237 165 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Bellilinea Bellilinea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;