RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934472 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20037890 20037890 PRJNA934472_P_NODE_37436_length_245_cov_0.895349_g37058_i0 PRJNA934472 37436 245 0.895349 2.19360505 Pseudohyphozyma bogoriensis 106002 Fungi Fungi 122 7.840000000000001e-33   NR KAI5476561.1 106002 g37058 i0 96.8 3.20816326530612 63 2 77.1 0 242 54 118 180 KAI5476561.1 hypothetical protein MNV49_007508 [Pseudohyphozyma bogoriensis] diamond 786 122 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes   Chrysozymaceae Pseudohyphozyma Pseudohyphozyma bogoriensis
27593824 27593824 PRJNA934472_P_NODE_29444_length_273_cov_1.625000_g29066_i0 PRJNA934472 29444 273 1.625 4.43625 Taiwanofungus camphoratus 2696576 Fungi Fungi 43.1 0.0358   NR KAI0943110.1 2696576 g29066 i0 45.3 0.582417582417582 53 28 57.1 1 85 240 206 258 KAI0943110.1 hypothetical protein AcV7_002347 [Taiwanofungus camphoratus] diamond 159 43.1 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Taiwanofungaceae Taiwanofungus Taiwanofungus camphoratus
31889799 31889799 PRJNA934472_P_NODE_30257_length_270_cov_1.401015_g29879_i0 PRJNA934472 30257 270 1.401015 3.7827405 Trametes coccinea BRFM31 158605 Fungi Fungi 152 3.54e-42   NR OSD08519.1 1353009 g29879 i0 80 14 90 17 98.9 1 269 3 152 241 OSD08519.1 actin-like protein ARPC3 [Trametes coccinea BRFM310] diamond 3780 152 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Trametes Trametes coccinea
32466723 32466723 PRJNA934472_P_NODE_39779_length_231_cov_2.278481_g39401_i0 PRJNA934472 39779 231 2.278481 5.26329111 root 1 Root_unresolved Root_unresolved 85.1 5.95e-18   NR KAG0151791.1 708437 g39401 i0 56.6 2.96103896103896 76 27 98.7 1 3 230 65 134 KAG0151791.1 hypothetical protein CROQUDRAFT_650846 [Cronartium quercuum f. sp. fusiforme G11] diamond 684 85.5 0.9953216374269 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Coleosporiaceae Cronartium Cronartium quercuum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;