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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 30 ✖

tax_kingdom 1

bioproject 1

  • PRJNA934472 · 30 ✖

analysis 1

  • diamond · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2531276 2531276 PRJNA934472_P_NODE_38922_length_241_cov_0.916667_g38544_i0 PRJNA934472 38922 241 0.916667 2.20916747 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 127 4.279999999999999e-34   NR HEY6523846.1 2586742 g38544 i0 82.5 1.99170124481328 80 14 99.6 0 2 241 35 114 HEY6523846.1 SDR family NAD(P)-dependent oxidoreductase [Solirubrobacteraceae bacterium] diamond 480 127 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
2531283 2531283 PRJNA934472_P_NODE_39962_length_228_cov_2.916129_g39584_i0 PRJNA934472 39962 228 2.916129 6.64877412 Bacteria 2 Bacteria Bacteria 99.4 3.27e-22   NR MEJ7831274.1 35761 g39584 i0 60 2.96052631578947 75 30 98.7 0 225 1 373 447 MEJ7831274.1 PD-(D/E)XK nuclease-like domain-containing protein [Nocardioides sp.] diamond 675 100 0.994 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
4739391 4739391 PRJNA934472_P_NODE_29044_length_275_cov_1.282178_g28666_i0 PRJNA934472 29044 275 1.282178 3.5259895 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 128 1.18e-33   NR MFN8052276.1 2201156 g28666 i0 79.2 2.53090909090909 77 16 84 0 274 44 252 328 MFN8052276.1 agmatine deiminase family protein [Acidimicrobiales bacterium] diamond 696 128 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
9839168 9839168 PRJNA934472_P_NODE_35848_length_249_cov_1.369318_g35470_i0 PRJNA934472 35848 249 1.369318 3.40960182 Actinomycetospora atypica 1290095 Bacteria Bacteria 91.3 9.25e-20   NR WP_378037359.1 1290095 g35470 i0 81.3 0.771084337349398 64 12 77.1 0 195 4 42 105 WP_378037359.1 tRNA lysidine(34) synthetase TilS [Actinomycetospora atypica] diamond 192 91.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora atypica
11114897 11114897 PRJNA934472_P_NODE_38549_length_242_cov_0.911243_g38171_i0 PRJNA934472 38549 242 0.911243 2.20520806 Planctomonas sp. JC2975 2729626 Bacteria Bacteria 137 2.449999999999999e-38   NR WP_205864543.1 2729626 g38171 i0 79.7 2.91322314049587 79 16 97.9 0 6 242 14 92 WP_205864543.1 alpha/beta fold hydrolase [Planctomonas sp. JC2975] diamond 705 137 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Planctomonas Planctomonas sp. JC2975
16214231 16214231 PRJNA934472_P_NODE_37433_length_245_cov_0.895349_g37055_i0 PRJNA934472 37433 245 0.895349 2.19360505 Yimella lutea 587872 Bacteria Bacteria 149 2.1e-42   NR WP_141927715.1 587872 g37055 i0 96.3 0.979591836734694 80 3 98 0 242 3 23 102 WP_141927715.1 carbohydrate kinase family protein [Yimella lutea] diamond 240 149 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Yimella Yimella lutea
18762851 18762851 PRJNA934472_P_NODE_35635_length_250_cov_0.870056_g35257_i0 PRJNA934472 35635 250 0.870056 2.17514 Egibacteraceae bacterium 3047544 Bacteria Bacteria 132 1.78e-34   NR HVM18354.1 3047544 g35257 i0 79 0.972 81 13 97.2 1 248 6 189 265 HVM18354.1 M14 family metallopeptidase [Egibacteraceae bacterium] diamond 243 132 1 Bacteria   Bacillati Actinomycetota Nitriliruptoria Egibacterales Egibacteraceae   Egibacteraceae bacterium
21313177 21313177 PRJNA934472_P_NODE_32077_length_263_cov_1.231579_g31699_i0 PRJNA934472 32077 263 1.231579 3.23905277 Actinomycetospora atypica 1290095 Bacteria Bacteria 119 8.72e-33   NR WP_378038886.1 1290095 g31699 i0 90.4 0.832699619771863 73 7 83.3 0 44 262 1 73 WP_378038886.1 MoaD/ThiS family protein [Actinomycetospora atypica] diamond 219 119 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora atypica
22588240 22588240 PRJNA934472_P_NODE_39858_length_230_cov_2.363057_g39480_i0 PRJNA934472 39858 230 2.363057 5.4350311 Mobilicoccus sp. 2034349 Bacteria Bacteria 137 9.91e-36   NR WP_312720187.1 2034349 g39480 i0 100 0.991304347826087 76 0 99.1 0 1 228 331 406 WP_312720187.1 3-hydroxybutyryl-CoA dehydrogenase [Mobilicoccus sp.] diamond 228 137 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Mobilicoccus Mobilicoccus sp.
22588245 22588245 PRJNA934472_P_NODE_40158_length_226_cov_2.013072_g39780_i0 PRJNA934472 40158 226 2.013072 4.54954272 Corynebacterium 1716 Bacteria Bacteria 148 2.47e-41   NR WP_301201701.1 1705 g39780 i0 98.7 2.98672566371681 75 1 99.6 0 226 2 95 169 WP_301201701.1 ATP-binding cassette domain-containing protein, partial [Corynebacterium stationis] diamond 675 148 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium stationis
22933402 22933402 PRJNA934472_P_NODE_33798_length_256_cov_1.469945_g33420_i0 PRJNA934472 33798 256 1.469945 3.7630592 Nostocoides japonicum 99481 Bacteria Bacteria 161 1.02e-45   NR WP_083454884.1 99481 g33420 i0 94 0.984375 84 5 98.4 0 3 254 121 204 WP_083454884.1 SGNH/GDSL hydrolase family protein [Nostocoides japonicum] diamond 252 161 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Nostocoides Nostocoides japonicum
23863319 23863319 PRJNA934472_P_NODE_25959_length_289_cov_1.425926_g25581_i0 PRJNA934472 25959 289 1.425926 4.12092614 Parenemella sanctibonifatiensis 2016505 Bacteria Bacteria 188 1.73e-56   NR WP_094454295.1 2016505 g25581 i0 99 0.996539792387543 96 1 99.7 0 1 288 206 301 WP_094454295.1 ABC transporter permease [Parenemella sanctibonifatiensis] diamond 288 188 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Parenemella Parenemella sanctibonifatiensis
25137333 25137333 PRJNA934472_P_NODE_35060_length_251_cov_1.724719_g34682_i0 PRJNA934472 35060 251 1.724719 4.32904469 Streptomyces 1883 Bacteria Bacteria 125 3.3099999999999995e-32   NR WP_285346617.1 68223 g34682 i0 79.5 4.9601593625498 83 17 99.2 0 249 1 104 186 WP_285346617.1 NAD(P)/FAD-dependent oxidoreductase [Streptomyces katrae] diamond 1245 125 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces katrae
26708109 26708109 PRJNA934472_P_NODE_35141_length_251_cov_1.393258_g34763_i0 PRJNA934472 35141 251 1.393258 3.49707758 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 74.3 3.06e-13   NR HTU97599.1 2586742 g34763 i0 94.3 0.418326693227092 35 2 41.8 0 143 247 1 35 HTU97599.1 protein kinase [Solirubrobacteraceae bacterium] diamond 105 74.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
26708111 26708111 PRJNA934472_P_NODE_38181_length_243_cov_0.905882_g37803_i0 PRJNA934472 38181 243 0.905882 2.20129326 Collinsella tanakaei 626935 Bacteria Bacteria 119 1.7e-32   NR WP_289609960.1 626935 g37803 i0 95.5 0.827160493827161 67 3 82.7 0 243 43 56 122 WP_289609960.1 hypothetical protein [Collinsella tanakaei] diamond 201 119 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Collinsella tanakaei
26739646 26739646 PRJNA934472_P_NODE_38201_length_243_cov_0.905882_g37823_i0 PRJNA934472 38201 243 0.905882 2.20129326 Microbacterium sp. cf 51671 Bacteria Bacteria 48.9 1.97e-4   NR WP_091704843.1 1761803 g37823 i0 64 0.617283950617284 50 12 54.3 1 133 2 1 50 WP_091704843.1 hypothetical protein [Microbacterium sp. cf046] diamond 150 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. cf046
26898510 26898510 PRJNA934472_P_NODE_36341_length_248_cov_0.880000_g35963_i0 PRJNA934472 36341 248 0.88 2.1824 Kocuria atrinae 592377 Bacteria Bacteria 164 8.63e-48   NR WP_344223340.1 592377 g35963 i0 100 0.991935483870968 82 0 99.2 0 246 1 242 323 WP_344223340.1 siderophore-interacting protein [Kocuria atrinae] diamond 246 164 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria atrinae
27372953 27372953 PRJNA934472_P_NODE_28343_length_278_cov_1.419512_g27965_i0 PRJNA934472 28343 278 1.419512 3.94624336 Humibacter ginsenosidimutans 2599293 Bacteria Bacteria 133 1.24e-37   NR WP_246846626.1 2599293 g27965 i0 71.7 0.992805755395683 92 26 99.3 0 278 3 4 95 WP_246846626.1 PASTA domain-containing protein [Humibacter ginsenosidimutans] diamond 276 133 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Humibacter Humibacter ginsenosidimutans
27593828 27593828 PRJNA934472_P_NODE_38184_length_243_cov_0.905882_g37806_i0 PRJNA934472 38184 243 0.905882 2.20129326 Agrococcus baldri 153730 Bacteria Bacteria 114 3.56e-31   NR WP_092917132.1 153730 g37806 i0 90.9 2.44444444444444 66 6 81.5 0 243 46 17 82 WP_092917132.1 type II toxin-antitoxin system prevent-host-death family antitoxin [Agrococcus baldri] diamond 594 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus baldri
28098786 28098786 PRJNA934472_P_NODE_39305_length_237_cov_2.042683_g38927_i0 PRJNA934472 39305 237 2.042683 4.84115871 Pseudonocardia sp. GCM1 60912 Bacteria Bacteria 40.8 0.0214   NR WP_379613409.1 3252653 g38927 i0 44.1 0.430379746835443 34 19 43 0 235 134 29 62 WP_379613409.1 hypothetical protein [Pseudonocardia sp. GCM10023141] diamond 102 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. GCM10023141
28224936 28224936 PRJNA934472_P_NODE_33826_length_256_cov_1.360656_g33448_i0 PRJNA934472 33826 256 1.360656 3.48327936 Nocardioidaceae bacterium 1871072 Bacteria Bacteria 58.9 8.42e-8   NR MEP7089342.1 1871072 g33448 i0 56.9 1.7109375 58 25 68 0 177 4 7 64 MEP7089342.1 MFS transporter [Nocardioidaceae bacterium] diamond 438 58.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae   Nocardioidaceae bacterium
29235625 29235625 PRJNA934472_P_NODE_36369_length_248_cov_0.880000_g35991_i0 PRJNA934472 36369 248 0.88 2.1824 Jatrophihabitans sp. 1932789 Bacteria Bacteria 145 3.02e-39   NR HEU5266423.1 1932789 g35991 i0 86.6 0.991935483870968 82 11 99.2 0 3 248 341 422 HEU5266423.1 VWA domain-containing protein [Jatrophihabitans sp.] diamond 246 145 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jatrophihabitantales Jatrophihabitantaceae Jatrophihabitans Jatrophihabitans sp.
29266911 29266911 PRJNA934472_P_NODE_32309_length_262_cov_1.370370_g31931_i0 PRJNA934472 32309 262 1.37037 3.5903694 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 147 5.08e-40   NR HEX3690122.1 2586742 g31931 i0 89.7 1.99236641221374 87 9 99.6 0 2 262 30 116 HEX3690122.1 chloride channel protein [Solirubrobacteraceae bacterium] diamond 522 147 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29582515 29582515 PRJNA934472_P_NODE_29730_length_272_cov_1.427136_g29352_i0 PRJNA934472 29730 272 1.427136 3.88180992 Solirubrobacter taibaiensis 1395955 Bacteria Bacteria 157 2.6799999999999993e-42   NR MDA0174017.1 1395955 g29352 i0 76.7 0.992647058823529 90 21 99.3 0 3 272 392 481 MDA0174017.1 hypothetical protein [Solirubrobacter taibaiensis] diamond 270 157 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae Solirubrobacter Solirubrobacter taibaiensis
29835396 29835396 PRJNA934472_P_NODE_35251_length_251_cov_0.865169_g34873_i0 PRJNA934472 35251 251 0.865169 2.17157419 Kocuria carniphila 262208 Bacteria Bacteria 80.5 1.34e-15   NR WP_369066577.1 262208 g34873 i0 88.1 0.50199203187251 42 5 50.2 0 249 124 320 361 WP_369066577.1 PDZ domain-containing protein [Kocuria carniphila] diamond 126 80.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria carniphila
29961806 29961806 PRJNA934472_P_NODE_39351_length_236_cov_2.570552_g38973_i0 PRJNA934472 39351 236 2.570552 6.06650272 Mycolicibacterium iranicum 912594 Bacteria Bacteria 157 3.72e-44   NR WP_268786029.1 912594 g38973 i0 100 0.991525423728814 78 0 99.2 0 3 236 327 404 WP_268786029.1 O-antigen ligase family protein [Mycolicibacterium iranicum] diamond 234 157 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium iranicum
29993497 29993497 PRJNA934472_P_NODE_39371_length_236_cov_2.128834_g38993_i0 PRJNA934472 39371 236 2.128834 5.02404824 Xylanimonas allomyrinae 2509459 Bacteria Bacteria 42.4 0.0436   NR WP_129205555.1 2509459 g38993 i0 43.6 0.495762711864407 39 22 49.6 0 180 64 40 78 WP_129205555.1 PaaX family transcriptional regulator C-terminal domain-containing protein [Xylanimonas allomyrinae] diamond 117 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Xylanimonas Xylanimonas allomyrinae
30025156 30025156 PRJNA934472_P_NODE_36731_length_247_cov_0.885057_g36353_i0 PRJNA934472 36731 247 0.885057 2.18609079 Gordonia sputi 36823 Bacteria Bacteria 151 3.69e-41   NR WP_005206479.1 36823 g36353 i0 98.8 0.995951417004049 82 1 99.6 0 247 2 88 169 WP_005206479.1 fatty-acid--CoA ligase FadD5 [Gordonia sputi] diamond 246 151 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sputi
32396215 32396215 PRJNA934472_P_NODE_22879_length_306_cov_2.047210_g22501_i0 PRJNA934472 22879 306 2.04721 6.2644626 Luethyella okanaganae 69372 Bacteria Bacteria 44.7 0.0164   NR WP_386731431.1 69372 g22501 i0 35.1 0.725490196078431 74 43 67.6 2 15 221 82 155 WP_386731431.1 hypothetical protein [Luethyella okanaganae] diamond 222 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Luethyella Luethyella okanaganae
32806246 32806246 PRJNA934472_P_NODE_38540_length_242_cov_0.911243_g38162_i0 PRJNA934472 38540 242 0.911243 2.20520806 Microbacterium sp. 5K11 51671 Bacteria Bacteria 155 4.029999999999999e-46   NR WP_252371084.1 2578104 g38162 i0 100 0.991735537190083 80 0 99.2 0 242 3 34 113 WP_252371084.1 DUF6350 family protein, partial [Microbacterium sp. 5K110] diamond 240 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. 5K110

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;