RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA934472 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21312961 21312961 PRJNA934472_P_NODE_22097_length_311_cov_1.197479_g21719_i0 PRJNA934472 22097 311 1.197479 3.72415969 Euglena gracilis 3039 Euglenozoa other_Eukaryota 171 2.41e-51   NR QLA09598.1 3039 g21719 i0 73.8 0.993569131832797 103 27 99.4 0 3 311 105 207 QLA09598.1 60S large subunit ribosomal protein uL1 [Euglena gracilis] diamond 309 171 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
30126581 30126581 PRJNA934472_P_NODE_34372_length_254_cov_1.309392_g33994_i0 PRJNA934472 34372 254 1.309392 3.32585568 Naegleria 5761 Heterolobosea other_Eukaryota 80.9 1.61e-15   NR XP_044564645.1 5763 g33994 i0 50.6 3.82677165354331 83 40 98 1 253 5 517 598 XP_044564645.1 uncharacterized protein FDP41_001085 [Naegleria fowleri] diamond 972 81.3 0.995079950799508 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
32269740 32269740 PRJNA934472_P_NODE_33898_length_256_cov_1.109290_g33520_i0 PRJNA934472 33898 256 1.10929 2.8397824 Euglena gracilis 3039 Euglenozoa other_Eukaryota 73.6 8.32e-14   NR 6ZJ3_SI 3039 g33520 i0 64.2 0.62109375 53 19 62.1 0 254 96 146 198 6ZJ3_SI Chain SI, Ribosomal protein eS7 [Euglena gracilis] diamond 159 73.6 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;