RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA934472" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA934472 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27126369 27126369 PRJNA934472_P_NODE_39362_length_236_cov_2.417178_g38984_i0 PRJNA934472 39362 236 2.417178 5.70454008 Dictyosteliaceae 2058185 Evosea other_Eukaryota 57.8 1.62e-7   NR KAF2076726.1 133409 g38984 i0 44.6 2.47881355932203 65 36 82.6 0 26 220 291 355 KAF2076726.1 hypothetical protein CYY_001983 [Polysphondylium violaceum] diamond 585 57.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
31826436 31826436 PRJNA934472_P_NODE_34837_length_252_cov_1.536313_g34459_i0 PRJNA934472 34837 252 1.536313 3.87150876 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.4 5.03e-20   NR XP_004356634.1 1257118 g34459 i0 48.3 1.03571428571429 87 39 96.4 1 244 2 8 94 XP_004356634.1 uncharacterized protein ACA1_173920 [Acanthamoeba castellanii str. Neff] diamond 261 87.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32301573 32301573 PRJNA934472_P_NODE_31539_length_265_cov_1.296875_g31161_i0 PRJNA934472 31539 265 1.296875 3.43671875 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 82.4 4.58e-16   NR PRP76242.1 1890364 g31161 i0 56.9 0.815094339622642 72 28 81.5 1 50 265 27 95 PRP76242.1 putative aminotransferase [Planoprotostelium fungivorum] diamond 216 82.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;