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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA934332" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934332 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2185931 2185931 PRJNA934332_P_NODE_2242_length_413_cov_1.850000_g2155_i0 PRJNA934332 2242 413 1.85 7.6405 Bovidae 9895 Chordata Chordata 56.2 1.52e-6   NR XP_061284659.1 9906 g2155 i0 61.2 25.271186440678 49 19 35.6 0 148 2 57 105 XP_061284659.1 large ribosomal subunit protein uL23-like [Bos javanicus] diamond 10437 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
3807448 3807448 PRJNA934332_P_NODE_1323_length_526_cov_0.792494_g1238_i0 PRJNA934332 1323 526 0.792494 4.16851844 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 189 9.649999999999999e-54   NR XP_034508924.1 9646 g1238 i0 55.9 14.6577946768061 186 70 99.2 3 3 524 112 297 XP_034508924.1 major vault protein-like, partial [Ailuropoda melanoleuca] diamond 7710 189 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
8563605 8563605 PRJNA934332_P_NODE_6827_length_263_cov_1.215789_g6740_i0 PRJNA934332 6827 263 1.215789 3.19752507 Metazoa 33208 Chordata Chordata 108 3.18e-27   NR XP_004699157.1 9371 g6740 i0 56 18.3992395437262 91 32 94.7 1 6 254 3 93 XP_004699157.1 ADP/ATP translocase 3, partial [Echinops telfairi] diamond 4839 108 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
21657698 21657698 PRJNA934332_P_NODE_1837_length_450_cov_1.681698_g1750_i0 PRJNA934332 1837 450 1.681698 7.567641 Bovidae 9895 Chordata Chordata 89 7.84e-19   NR XP_061284659.1 9906 g1750 i0 65.8 26.74 73 25 48.7 0 232 450 51 123 XP_061284659.1 large ribosomal subunit protein uL23-like [Bos javanicus] diamond 12033 89 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
23862955 23862955 PRJNA934332_P_NODE_3339_length_351_cov_1.089928_g3252_i0 PRJNA934332 3339 351 1.089928 3.82564728 Anura 8342 Chordata Chordata 126 6.81e-31   NR XP_069815592.1 150705 g3252 i0 54.5 5.67521367521368 110 49 94 1 332 3 279 387 XP_069815592.1 ATP-dependent translocase ABCB1-like isoform X2 [Dendropsophus ebraccatus] diamond 1992 126 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
26683666 26683666 PRJNA934332_P_NODE_5381_length_288_cov_1.218605_g5294_i0 PRJNA934332 5381 288 1.218605 3.5095824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 85.9 1.44e-17   NR CBY24419.1 34765 g5294 i0 44.3 5.04166666666667 97 52 99 2 2 286 30 126 CBY24419.1 unnamed protein product [Oikopleura dioica] diamond 1452 85.9 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
27846154 27846154 PRJNA934332_P_NODE_6744_length_264_cov_1.560209_g6657_i0 PRJNA934332 6744 264 1.560209 4.11895176 Mus musculus 10090 Chordata Chordata 68.6 4.11e-11   NR NP_001403203.1 10090 g6657 i0 34.5 7.93181818181818 87 57 98.9 0 264 4 853 939 NP_001403203.1 importin-5 isoform 3 [Mus musculus] diamond 2094 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27877850 27877850 PRJNA934332_P_NODE_4465_length_312_cov_1.154812_g4378_i0 PRJNA934332 4465 312 1.154812 3.60301344 Ciona intestinalis 7719 Chordata Chordata 130 9.01e-37   NR XP_002128932.1 7719 g4378 i0 70.5 8.13461538461539 95 28 91.3 0 1 285 31 125 XP_002128932.1 60S ribosomal protein L31 [Ciona intestinalis] diamond 2538 130 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
27909131 27909131 PRJNA934332_P_NODE_11225_length_241_cov_0.916667_g11138_i0 PRJNA934332 11225 241 0.916667 2.20916747 Xenopus laevis 8355 Chordata Chordata 42.7 0.0303   NR OCT99772.1 8355 g11138 i0 42.3 0.647302904564315 52 30 64.7 0 189 34 39 90 OCT99772.1 hypothetical protein XELAEV_18005553mg [Xenopus laevis] diamond 156 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29148205 29148205 PRJNA934332_P_NODE_5689_length_282_cov_2.875598_g5602_i0 PRJNA934332 5689 282 2.875598 8.10918636 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 100 1.74e-22   NR XP_032831964.1 7757 g5602 i0 53.3 6.91489361702128 92 43 97.9 0 277 2 272 363 XP_032831964.1 protoheme IX farnesyltransferase, mitochondrial [Petromyzon marinus] diamond 1950 100 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
29337336 29337336 PRJNA934332_P_NODE_6209_length_273_cov_1.710000_g6122_i0 PRJNA934332 6209 273 1.71 4.6683 Opisthokonta 33154 Chordata Chordata 57 3.22e-7   NR XP_019641702.1 7741 g6122 i0 55.2 2.73626373626374 67 30 73.6 0 203 3 4 70 XP_019641702.1 PREDICTED: 60S ribosomal protein L7-like [Branchiostoma belcheri] diamond 747 57.4 0.993031358885017 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29645571 29645571 PRJNA934332_P_NODE_9010_length_247_cov_0.885057_g8923_i0 PRJNA934332 9010 247 0.885057 2.18609079 Hyperolius riggenbachi 752182 Chordata Chordata 52 2.06e-5   NR XP_068099683.1 752182 g8923 i0 33.8 0.898785425101215 74 49 89.9 0 242 21 143 216 XP_068099683.1 E3 ubiquitin-protein ligase TRIM11-like [Hyperolius riggenbachi] diamond 222 52 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
29930395 29930395 PRJNA934332_P_NODE_9431_length_246_cov_0.890173_g9344_i0 PRJNA934332 9431 246 0.890173 2.18982558 Branchiostoma lanceolatum 7740 Chordata Chordata 89 2.11e-18   NR XP_066283044.1 7740 g9344 i0 49.3 2.85365853658537 75 38 91.5 0 5 229 403 477 XP_066283044.1 sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like [Branchiostoma lanceolatum] diamond 702 89 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29930396 29930396 PRJNA934332_P_NODE_9791_length_245_cov_0.895349_g9704_i0 PRJNA934332 9791 245 0.895349 2.19360505 Canis lupus dingo 286419 Chordata Chordata 70.9 4.69e-12   NR XP_048955576.1 286419 g9704 i0 39.8 7.39591836734694 88 40 91.8 1 245 21 484 571 XP_048955576.1 LINE-1 retrotransposable element ORF2 protein isoform X1 [Canis lupus dingo] diamond 1812 70.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
30056450 30056450 PRJNA934332_P_NODE_9871_length_245_cov_0.895349_g9784_i0 PRJNA934332 9871 245 0.895349 2.19360505 Lepus europaeus 9983 Chordata Chordata 42.7 0.0373   NR XP_062053589.1 9983 g9784 i0 35.2 0.661224489795918 54 32 66.1 1 173 12 150 200 XP_062053589.1 uncharacterized protein LOC133763912 [Lepus europaeus] diamond 162 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Lepus Lepus europaeus
30411497 30411497 PRJNA934332_P_NODE_11153_length_241_cov_0.916667_g11066_i0 PRJNA934332 11153 241 0.916667 2.20916747 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 94 3.55e-20   NR XP_064422227.1 7897 g11066 i0 53.8 18.7344398340249 80 37 99.6 0 2 241 2555 2634 XP_064422227.1 dynein axonemal heavy chain 1 [Latimeria chalumnae] diamond 4515 94.4 0.995762711864407 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
30916861 30916861 PRJNA934332_P_NODE_4834_length_301_cov_1.350877_g4747_i0 PRJNA934332 4834 301 1.350877 4.06613977 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 149 8.949999999999997e-42   NR XP_040204293.1 8407 g4747 i0 73.4 11.4318936877076 94 24 92.7 1 21 299 224 317 XP_040204293.1 cathepsin B [Rana temporaria] diamond 3441 150 0.993333333333333 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
30916862 30916862 PRJNA934332_P_NODE_8594_length_248_cov_0.880000_g8507_i0 PRJNA934332 8594 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 80.5 1.93e-15   NR XP_061860370.1 57412 g8507 i0 67.9 9.30241935483871 56 18 67.7 0 2 169 438 493 XP_061860370.1 lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Colius striatus] diamond 2307 81.3 0.990159901599016 Eukaryota Opisthokonta Metazoa Chordata Aves Coliiformes Coliidae Colius Colius striatus
31288776 31288776 PRJNA934332_P_NODE_8975_length_247_cov_0.885057_g8888_i0 PRJNA934332 8975 247 0.885057 2.18609079 Bufotes viridis 30338 Chordata Chordata 50.1 9.89e-5   NR CAK8629749.1 30338 g8888 i0 73.3 0.364372469635628 30 8 36.4 0 128 217 335 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 90 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31517468 31517468 PRJNA934332_P_NODE_2336_length_406_cov_2.537538_g2249_i0 PRJNA934332 2336 406 2.537538 10.30240428 Mammalia 40674 Chordata Chordata 150 2.31e-44   NR XP_045851754.1 9662 g2249 i0 80 49.8768472906404 90 18 66.5 0 3 272 22 111 XP_045851754.1 60S ribosomal protein L10a-like [Meles meles] diamond 20250 151 0.993377483443709 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Meles Meles meles
31833443 31833443 PRJNA934332_P_NODE_3497_length_345_cov_0.966912_g3410_i0 PRJNA934332 3497 345 0.966912 3.3358464 Opisthokonta 33154 Chordata Chordata 133 8.59e-37   NR XP_002129675.1 7719 g3410 i0 52.2 27.9913043478261 113 54 98.3 0 1 339 39 151 XP_002129675.1 GTP-binding protein SAR1b [Ciona intestinalis] diamond 9657 134 0.992537313432836 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
31984706 31984706 PRJNA934332_P_NODE_6318_length_272_cov_0.974874_g6231_i0 PRJNA934332 6318 272 0.974874 2.65165728 Branchiostoma belcheri 7741 Chordata Chordata 106 6.06e-26   NR XP_019641702.1 7741 g6231 i0 64.8 1.94117647058824 88 31 97.1 0 269 6 28 115 XP_019641702.1 PREDICTED: 60S ribosomal protein L7-like [Branchiostoma belcheri] diamond 528 106 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32687218 32687218 PRJNA934332_P_NODE_5700_length_282_cov_1.827751_g5613_i0 PRJNA934332 5700 282 1.827751 5.15425782 Metazoa 33208 Chordata Chordata 125 7.0000000000000015e-31   NR XP_035690270.1 7739 g5613 i0 70.2 11.8829787234043 94 28 100 0 1 282 558 651 XP_035690270.1 major vault protein-like isoform X5 [Branchiostoma floridae] diamond 3351 125 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32743423 32743423 PRJNA934332_P_NODE_10600_length_243_cov_0.905882_g10513_i0 PRJNA934332 10600 243 0.905882 2.20129326 Phallusia mammillata 59560 Chordata Chordata 43.1 0.0261   NR CAB3266245.1 59560 g10513 i0 41 1.50617283950617 61 36 75.3 0 6 188 222 282 CAB3266245.1 solute carrier family 35 member F3-like [Phallusia mammillata] diamond 366 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;