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contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA934332" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 22 ✖

tax_kingdom 1

bioproject 1

  • PRJNA934332 · 22 ✖

analysis 1

  • diamond · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1255413 1255413 PRJNA934332_P_NODE_10841_length_242_cov_0.911243_g10754_i0 PRJNA934332 10841 242 0.911243 2.20520806 Mycolicibacterium 1866885 Bacteria Bacteria 129 1.63e-33   NR KLI04824.1 1796 g10754 i0 100 1.61157024793388 65 0 80.6 0 241 47 395 459 KLI04824.1 hypothetical protein AA982_28030 [Mycolicibacterium senegalense] diamond 390 129 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium senegalense
19106823 19106823 PRJNA934332_P_NODE_6275_length_272_cov_2.035176_g6188_i0 PRJNA934332 6275 272 2.035176 5.53567872 Rubrobacter 42255 Bacteria Bacteria 112 3.02e-28   NR WP_166180504.1 2653851 g6188 i0 72.4 2.51470588235294 76 20 83.8 1 271 44 197 271 WP_166180504.1 MOSC domain-containing protein [Rubrobacter tropicus] diamond 684 113 0.991150442477876 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter tropicus
22587590 22587590 PRJNA934332_P_NODE_4378_length_315_cov_1.161157_g4291_i0 PRJNA934332 4378 315 1.161157 3.65764455 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 169 9.69e-52   NR MCP3885490.1 2021380 g4291 i0 76 0.990476190476191 104 25 99 0 314 3 4 107 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 312 169 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
26613258 26613258 PRJNA934332_P_NODE_10101_length_244_cov_0.900585_g10014_i0 PRJNA934332 10101 244 0.900585 2.1974274 unclassified Mycolicibacterium 2636767 Bacteria Bacteria 137 6.779999999999999e-37   NR WP_155909834.1 2636767 g10014 i0 85 0.983606557377049 80 12 98.4 0 3 242 235 314 WP_155909834.1 MULTISPECIES: DUF1173 family protein [unclassified Mycolicibacterium] diamond 240 137 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium  
26620416 26620416 PRJNA934332_P_NODE_4741_length_304_cov_0.865801_g4654_i0 PRJNA934332 4741 304 0.865801 2.63203504 Bacteria 2 Bacteria Bacteria 43.5 0.0417   NR WP_083362910.1 412690 g4654 i0 29.5 1.72697368421053 88 56 81.9 3 6 254 981 1067 WP_083362910.1 DUF4082 domain-containing protein [Microterricola viridarii] diamond 525 43.9 0.990888382687927 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microterricola Microterricola viridarii
26676441 26676441 PRJNA934332_P_NODE_8461_length_249_cov_0.875000_g8374_i0 PRJNA934332 8461 249 0.875 2.17875 Nocardia sp. BSTN 1821 Bacteria Bacteria 56.6 4.41e-7   NR WP_194807579.1 2783665 g8374 i0 57.1 0.674698795180723 56 23 67.5 1 77 244 1 55 WP_194807579.1 nuclear transport factor 2 family protein [Nocardia sp. BSTN01] diamond 168 56.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sp. BSTN01
26993064 26993064 PRJNA934332_P_NODE_7462_length_251_cov_1.382022_g7375_i0 PRJNA934332 7462 251 1.382022 3.46887522 Mycobacterium sp. 1785 Bacteria Bacteria 174 6.64e-53   NR MBI3215368.1 1785 g7375 i0 100 0.99203187250996006 83 0 99.2 0 2 250 32 114 MBI3215368.1 hypothetical protein [Mycobacterium sp.] diamond 249 174 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
27246195 27246195 PRJNA934332_P_NODE_9623_length_245_cov_2.087209_g9536_i0 PRJNA934332 9623 245 2.087209 5.11366205 Streptomyces sp. NPDC 1931 Bacteria Bacteria 40.8 0.0311   NR WP_366701689.1 3154622 g9536 i0 41.4 0.710204081632653 58 27 68.6 3 241 74 1 53 WP_366701689.1 hypothetical protein [Streptomyces sp. NPDC048389] diamond 174 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC048389
27625399 27625399 PRJNA934332_P_NODE_10664_length_243_cov_0.894118_g10577_i0 PRJNA934332 10664 243 0.894118 2.17270674 Actinomycetota bacterium 2900548 Bacteria Bacteria 161 1.44e-45   NR HEX6579508.1 2900548 g10577 i0 88.9 4 81 9 100 0 243 1 235 315 HEX6579508.1 multicopper oxidase domain-containing protein [Actinomycetota bacterium] diamond 972 161 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27941079 27941079 PRJNA934332_P_NODE_4985_length_297_cov_1.031250_g4898_i0 PRJNA934332 4985 297 1.03125 3.0628125 Actinomadura sp. NBRC 1 1989 Bacteria Bacteria 41.2 0.0386   NR GLZ08927.1 3032203 g4898 i0 53.3 0.303030303030303 30 14 30.3 0 30 119 46 75 GLZ08927.1 hypothetical protein Acsp03_63930 [Actinomadura sp. NBRC 104412] diamond 90 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. NBRC 104412
28509361 28509361 PRJNA934332_P_NODE_8247_length_249_cov_0.875000_g8160_i0 PRJNA934332 8247 249 0.875 2.17875 Kocuria sp. CPCC 2 1871328 Bacteria Bacteria 40 0.0468   NR WP_387919956.1 3058904 g8160 i0 40 0.481927710843373 40 24 48.2 0 81 200 2 41 WP_387919956.1 hypothetical protein [Kocuria sp. CPCC 205300] diamond 120 40 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. CPCC 205300
28800291 28800291 PRJNA934332_P_NODE_5347_length_289_cov_0.814815_g5260_i0 PRJNA934332 5347 289 0.814815 2.35481535 FCB group 1783270 Bacteria Bacteria 49.7 2.25e-4   NR HXX91425.1 2201156 g5260 i0 40.4 2.88581314878893 94 51 96.5 3 279 1 270 359 HXX91425.1 glycosyltransferase family 61 protein [Acidimicrobiales bacterium] diamond 834 50.1 0.992015968063872 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
29109388 29109388 PRJNA934332_P_NODE_8248_length_249_cov_0.875000_g8161_i0 PRJNA934332 8248 249 0.875 2.17875 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 59.3 5.31e-8   NR HEV7885180.1 2586742 g8161 i0 39 3.49397590361446 77 47 92.8 0 246 16 233 309 HEV7885180.1 hypothetical protein [Solirubrobacteraceae bacterium] diamond 870 59.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29684283 29684283 PRJNA934332_P_NODE_7470_length_251_cov_1.297753_g7383_i0 PRJNA934332 7470 251 1.297753 3.25736003 Bacteria 2 Bacteria Bacteria 99 5.51e-23   NR MCU1457491.1 1883427 g7383 i0 53.8 7.80478087649402 80 37 95.6 0 2 241 74 153 MCU1457491.1 Aromatic ring-opening dioxygenase, catalytic subunit, LigB family [Actinomycetes bacterium] diamond 1959 99 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
29803770 29803770 PRJNA934332_P_NODE_5871_length_279_cov_1.495146_g5784_i0 PRJNA934332 5871 279 1.495146 4.17145734 Pseudonocardiaceae bacterium 1873463 Bacteria Bacteria 94.7 2.66e-20   NR HEX3649601.1 1873463 g5784 i0 74.6 3.1505376344086 67 17 72 0 279 79 399 465 HEX3649601.1 glycerol kinase GlpK [Pseudonocardiaceae bacterium] diamond 879 94.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae   Pseudonocardiaceae bacterium
29930389 29930389 PRJNA934332_P_NODE_10731_length_242_cov_0.911243_g10644_i0 PRJNA934332 10731 242 0.911243 2.20520806 uncultured Williamsia sp. 259311 Bacteria Bacteria 103 7.66e-26   NR WP_299570209.1 259311 g10644 i0 92.2 0.632231404958678 51 4 63.2 0 241 89 135 185 WP_299570209.1 dTDP-4-dehydrorhamnose 3,5-epimerase [uncultured Williamsia sp.] diamond 153 103 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia uncultured Williamsia sp.
30341469 30341469 PRJNA934332_P_NODE_3312_length_352_cov_1.103943_g3225_i0 PRJNA934332 3312 352 1.103943 3.88587936 Actinomycetota bacterium 2900548 Bacteria Bacteria 133 5.41e-34   NR MBS1889662.1 2900548 g3225 i0 53.4 1.00568181818182 118 54 99.7 1 2 352 119 236 MBS1889662.1 ubiquitin-conjugating enzyme E2 [Actinomycetota bacterium] diamond 354 133 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30783263 30783263 PRJNA934332_P_NODE_4694_length_305_cov_1.327586_g4607_i0 PRJNA934332 4694 305 1.327586 4.0491373 Acidimicrobiaceae bacterium 2024894 Bacteria Bacteria 59.7 8.47e-9   NR MCY3650208.1 2024894 g4607 i0 52.4 0.413114754098361 42 20 41.3 0 295 170 2 43 MCY3650208.1 RCC1 domain-containing protein [Acidimicrobiaceae bacterium] diamond 126 59.7 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Acidimicrobiaceae   Acidimicrobiaceae bacterium
31099083 31099083 PRJNA934332_P_NODE_10075_length_244_cov_0.900585_g9988_i0 PRJNA934332 10075 244 0.900585 2.1974274 Longivirga aurantiaca 1837743 Bacteria Bacteria 94.4 6.550000000000001e-21   NR WP_386765817.1 1837743 g9988 i0 57 0.971311475409836 79 34 97.1 0 3 239 111 189 WP_386765817.1 GGDEF domain-containing protein [Longivirga aurantiaca] diamond 237 94.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Sporichthyales Sporichthyaceae Longivirga Longivirga aurantiaca
31510451 31510451 PRJNA934332_P_NODE_10796_length_242_cov_0.911243_g10709_i0 PRJNA934332 10796 242 0.911243 2.20520806 Streptomyces sp. CHB9.2 2841670 Bacteria Bacteria 120 5.46e-30   NR WP_252941086.1 2841670 g10709 i0 71.3 0.991735537190083 80 22 97.9 1 238 2 147 226 WP_252941086.1 hypothetical protein [Streptomyces sp. CHB9.2] diamond 240 120 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CHB9.2
31858130 31858130 PRJNA934332_P_NODE_6857_length_262_cov_1.470899_g6770_i0 PRJNA934332 6857 262 1.470899 3.85375538 Amycolatopsis iheyensis 2945988 Bacteria Bacteria 46.6 0.0018600000000000001   NR WP_257925344.1 2945988 g6770 i0 35.4 2.72519083969466 79 44 82.4 2 223 8 20 98 WP_257925344.1 TylF/MycF family methyltransferase [Amycolatopsis iheyensis] diamond 714 46.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis iheyensis
32079660 32079660 PRJNA934332_P_NODE_5758_length_281_cov_1.480769_g5671_i0 PRJNA934332 5758 281 1.480769 4.16096089 Jatrophihabitans endophyticus 1206085 Bacteria Bacteria 48.9 3.86e-4   NR WP_304050341.1 1206085 g5671 i0 41.3 5.61565836298932 92 48 96.1 3 274 5 67 154 WP_304050341.1 sugar porter family MFS transporter [Jatrophihabitans endophyticus] diamond 1578 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jatrophihabitantales Jatrophihabitantaceae Jatrophihabitans Jatrophihabitans endophyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;