RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA934332" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA934332 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27657012 27657012 PRJNA934332_P_NODE_6884_length_262_cov_0.968254_g6797_i0 PRJNA934332 6884 262 0.968254 2.53682548 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 126 4.77e-33   NR XP_013760592.1 461836 g6797 i0 78.7 0.858778625954199 75 16 85.9 0 3 227 161 235 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 225 126 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28382999 28382999 PRJNA934332_P_NODE_4486_length_311_cov_1.432773_g4399_i0 PRJNA934332 4486 311 1.432773 4.45592403 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 84.3 2.05e-16   NR XP_013760687.1 461836 g4399 i0 45.1 0.983922829581994 102 56 98.4 0 310 5 581 682 XP_013760687.1 uncharacterized protein AMSG_02847 [Thecamonas trahens ATCC 50062] diamond 306 84.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30214395 30214395 PRJNA934332_P_NODE_6252_length_273_cov_1.155000_g6165_i0 PRJNA934332 6252 273 1.155 3.15315 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 53.1 1.18e-5   NR XP_013756049.1 461836 g6165 i0 35.7 0.769230769230769 70 44 75.8 1 215 9 450 519 XP_013756049.1 NAD-specific glutamate dehydrogenase [Thecamonas trahens ATCC 50062] diamond 210 53.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30309830 30309830 PRJNA934332_P_NODE_4652_length_306_cov_1.854077_g4565_i0 PRJNA934332 4652 306 1.854077 5.67347562 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 57 1.88e-7   NR XP_013753243.1 461836 g4565 i0 35 1.00980392156863 103 63 97.1 3 7 303 59 161 XP_013753243.1 uncharacterized protein AMSG_10809 [Thecamonas trahens ATCC 50062] diamond 309 57 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;