RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA931595" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA931595 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27941060 27941060 PRJNA931595_P_NODE_7205_length_302_cov_2.187773_g7096_i0 PRJNA931595 7205 302 2.187773 6.60707446 Sandaracinus amylolyticus 927083 Bacteria Bacteria 44.3 0.0211   NR WP_338054962.1 927083 g7096 i0 43.6 0.387417218543046 39 22 38.7 0 56 172 487 525 WP_338054962.1 N-acyl-D-amino-acid deacylase family protein [Sandaracinus amylolyticus] diamond 117 44.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
30151089 30151089 PRJNA931595_P_NODE_10472_length_268_cov_1.579487_g10363_i0 PRJNA931595 10472 268 1.579487 4.23302516 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47.8 7.2e-4   NR MBS2031688.1 2026735 g10363 i0 31.1 0.828358208955224 74 50 82.8 1 4 225 176 248 MBS2031688.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 222 47.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30498931 30498931 PRJNA931595_P_NODE_8413_length_286_cov_1.798122_g8304_i0 PRJNA931595 8413 286 1.798122 5.14262892 Myxococcales bacterium 2026763 Bacteria Bacteria 92.8 6.860000000000001e-21   NR MBL8608393.1 2026763 g8304 i0 47.4 0.996503496503496 95 50 99.7 0 2 286 112 206 MBL8608393.1 hypothetical protein [Myxococcales bacterium] diamond 285 92.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31257207 31257207 PRJNA931595_P_NODE_12375_length_251_cov_0.865169_g12266_i0 PRJNA931595 12375 251 0.865169 2.17157419 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.1 0.006   NR MBT4088359.1 2026735 g12266 i0 65.5 0.346613545816733 29 10 34.7 0 122 36 246 274 MBT4088359.1 4Fe-4S binding protein [Deltaproteobacteria bacterium] diamond 87 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32206295 32206295 PRJNA931595_P_NODE_8918_length_282_cov_1.277512_g8809_i0 PRJNA931595 8918 282 1.277512 3.60258384 Polyangiaceae bacterium 2268199 Bacteria Bacteria 95.1 1.9e-22   NR HEX3855461.1 2268199 g8809 i0 61.3 0.98936170212766 93 36 98.9 0 2 280 19 111 HEX3855461.1 helix-turn-helix domain-containing protein [Polyangiaceae bacterium] diamond 279 95.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;