RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA931595" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA931595 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28193368 28193368 PRJNA931595_P_NODE_9466_length_277_cov_1.852941_g9357_i0 PRJNA931595 9466 277 1.852941 5.13264657 Acrasis kona 1008807 Heterolobosea other_Eukaryota 47.8 8.06e-4   NR KAL0490210.1 1008807 g9357 i0 42.3 0.563176895306859 52 30 56.3 0 55 210 54 105 KAL0490210.1 rplL [Acrasis kona] diamond 156 47.8 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29582492 29582492 PRJNA931595_P_NODE_14190_length_245_cov_0.895349_g14081_i0 PRJNA931595 14190 245 0.895349 2.19360505 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 99.4 4.61e-22   NR XP_002673062.1 5762 g14081 i0 62.8 0.955102040816327 78 29 95.5 0 236 3 9 86 XP_002673062.1 uncharacterized protein NAEGRDRAFT_56300 [Naegleria gruberi] diamond 234 99.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30467622 30467622 PRJNA931595_P_NODE_12153_length_252_cov_0.860335_g12044_i0 PRJNA931595 12153 252 0.860335 2.1680442 Acrasis kona 1008807 Heterolobosea other_Eukaryota 53.1 9.06e-6   NR KAL0483095.1 1008807 g12044 i0 35.3 2.02380952380952 85 54 100 1 252 1 420 504 KAL0483095.1 hypothetical protein AKO1_014970 [Acrasis kona] diamond 510 53.1 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
30783243 30783243 PRJNA931595_P_NODE_9334_length_278_cov_1.941463_g9225_i0 PRJNA931595 9334 278 1.941463 5.39726714 Acrasis kona 1008807 Heterolobosea other_Eukaryota 107 1.01e-25   NR KAL0491221.1 1008807 g9225 i0 62.2 0.884892086330935 82 30 87.4 1 34 276 9 90 KAL0491221.1 translocase subunit SecA [Acrasis kona] diamond 246 107 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;