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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA931595" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA931595 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27182779 27182779 PRJNA931595_P_NODE_8122_length_289_cov_1.236111_g8013_i0 PRJNA931595 8122 289 1.236111 3.57236079 Bufotes viridis 30338 Chordata Chordata 45.4 0.00712   NR CAK8609802.1 30338 g8013 i0 62.5 0.332179930795848 32 12 33.2 0 190 285 1 32 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 96 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28572406 28572406 PRJNA931595_P_NODE_10487_length_268_cov_1.528205_g10378_i0 PRJNA931595 10487 268 1.528205 4.0955894 Phyllostomus discolor 89673 Chordata Chordata 53.5 8.22e-6   NR XP_035889096.1 89673 g10378 i0 45.8 3.30223880597015 59 32 66 0 268 92 315 373 XP_035889096.1 NACHT, LRR and PYD domains-containing protein 1-like [Phyllostomus discolor] diamond 885 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
28895121 28895121 PRJNA931595_P_NODE_12688_length_250_cov_0.870056_g12579_i0 PRJNA931595 12688 250 0.870056 2.17514 Metazoa 33208 Chordata Chordata 64.3 9.27e-11   NR XP_061413560.1 7753 g12579 i0 100 258.204 34 0 40.8 0 250 149 107 140 XP_061413560.1 ATP synthase F(0) complex subunit C3, mitochondrial-like [Lethenteron reissneri] diamond 64551 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
28919597 28919597 PRJNA931595_P_NODE_10208_length_270_cov_2.279188_g10099_i0 PRJNA931595 10208 270 2.279188 6.1538076 Sus scrofa 9823 Chordata Chordata 179 6.559999999999999e-52   NR XP_020938199.1 9823 g10099 i0 100 2.96666666666667 89 0 98.9 0 269 3 196 284 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 801 179 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
29211156 29211156 PRJNA931595_P_NODE_7749_length_292_cov_3.890411_g7640_i0 PRJNA931595 7749 292 3.890411 11.36000012 root 1 Root_unresolved Root_unresolved 199 2.57e-62   NR BAA10935.1 7801 g7640 i0 97.9 125.568493150685 97 2 99.7 0 2 292 74 170 BAA10935.1 nurse shark LMPX, partial [Ginglymostoma cirratum] diamond 36666 200 0.995 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Ginglymostomatidae Ginglymostoma Ginglymostoma cirratum
30214382 30214382 PRJNA931595_P_NODE_9272_length_279_cov_1.310680_g9163_i0 PRJNA931595 9272 279 1.31068 3.6567972 Engystomops pustulosus 76066 Chordata Chordata 44.3 0.0167   NR KAG8571490.1 76066 g9163 i0 54.8 7.75268817204301 42 17 43 2 155 274 987 1028 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 2163 44.7 0.991051454138702 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
30537536 30537536 PRJNA931595_P_NODE_12813_length_249_cov_1.971591_g12704_i0 PRJNA931595 12813 249 1.971591 4.90926159 Metazoa 33208 Chordata Chordata 147 1.74e-42   NR AZL49427.1 9031 g12704 i0 95.1 1412.50602409639 82 4 98.8 0 3 248 121 202 AZL49427.1 cytochrome c oxidase subunit I, partial [Gallus gallus] diamond 351714 148 0.993243243243243 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
30593567 30593567 PRJNA931595_P_NODE_12853_length_249_cov_1.607955_g12744_i0 PRJNA931595 12853 249 1.607955 4.00380795 Engystomops pustulosus 76066 Chordata Chordata 44.3 0.00117   NR KAG8584541.1 76066 g12744 i0 66.7 0.36144578313253 30 10 36.1 0 159 248 8 37 KAG8584541.1 hypothetical protein GDO81_004655 [Engystomops pustulosus] diamond 90 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31004455 31004455 PRJNA931595_P_NODE_13914_length_246_cov_0.890173_g13805_i0 PRJNA931595 13914 246 0.890173 2.18982558 Pyxicephalus adspersus 30357 Chordata Chordata 141 1.0499999999999998e-37   NR DBA16504.1 30357 g13805 i0 98.5 17.6463414634146 65 1 79.3 0 3 197 417 481 DBA16504.1 TPA: hypothetical protein GDO54_003891 [Pyxicephalus adspersus] diamond 4341 141 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pyxicephalidae Pyxicephalus Pyxicephalus adspersus
31383885 31383885 PRJNA931595_P_NODE_6056_length_324_cov_1.151394_g5947_i0 PRJNA931595 6056 324 1.151394 3.73051656 Polypterus senegalus 55291 Chordata Chordata 47 5.74e-4   NR XP_039590836.1 55291 g5947 i0 100 10.2037037037037 19 0 17.6 0 59 3 30 48 XP_039590836.1 pancreatic progenitor cell differentiation and proliferation factor-like [Polypterus senegalus] diamond 3306 47 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31422420 31422420 PRJNA931595_P_NODE_10736_length_266_cov_1.176166_g10627_i0 PRJNA931595 10736 266 1.176166 3.12860156 Chordata 7711 Chordata Chordata 129 5.349999999999999e-37   NR CAM4613088.1 8472 g10627 i0 100 29.4586466165414 62 0 69.9 0 81 266 1 62 CAM4613088.1 unnamed protein product [Lepidochelys kempii] diamond 7836 130 0.992307692307692 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
31636726 31636726 PRJNA931595_P_NODE_13416_length_247_cov_2.454023_g13307_i0 PRJNA931595 13416 247 2.454023 6.06143681 Engystomops pustulosus 76066 Chordata Chordata 57 3.8e-7   NR KAG8571490.1 76066 g13307 i0 51.6 3.01214574898785 62 30 75.3 0 2 187 1014 1075 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 744 57.4 0.993031358885017 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31801802 31801802 PRJNA931595_P_NODE_8437_length_286_cov_1.446009_g8328_i0 PRJNA931595 8437 286 1.446009 4.13558574 Chondrichthyes 7777 Chordata Chordata 147 3.12e-41   NR XP_059848313.1 79690 g8328 i0 100 25.6888111888112 70 0 73.4 0 1 210 240 309 XP_059848313.1 eukaryotic translation initiation factor 3 subunit G isoform X1 [Hypanus sabinus] diamond 7347 147 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
32844738 32844738 PRJNA931595_P_NODE_12400_length_251_cov_0.865169_g12291_i0 PRJNA931595 12400 251 0.865169 2.17157419 Chordata 7711 Chordata Chordata 64.3 1.04e-9   NR XP_038665106.1 7830 g12291 i0 97.1 189.9203187251 35 1 41.8 0 3 107 938 972 XP_038665106.1 disks large-associated protein 1 isoform X5 [Scyliorhinus canicula] diamond 47670 64.7 0.993817619783617 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;