RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA931595" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA931595 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16212877 16212877 PRJNA931595_P_NODE_9253_length_279_cov_1.495146_g9144_i0 PRJNA931595 9253 279 1.495146 4.17145734 Thermoanaerobacter 1754 Bacteria Bacteria 188 1.5999999999999999e-55   NR WP_006569145.1 106578 g9144 i0 98.9 10.8709677419355 92 1 98.9 0 277 2 148 239 WP_006569145.1 group II intron reverse transcriptase/maturase [Thermoanaerobacter siderophilus] diamond 3033 188 1 Bacteria   Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter siderophilus
27561850 27561850 PRJNA931595_P_NODE_1884_length_501_cov_0.890187_g1777_i0 PRJNA931595 1884 501 0.890187 4.45983687 Clostridiales bacterium 1898207 Bacteria Bacteria 344 6.189999999999999e-115   NR NBI65133.1 1898207 g1777 i0 99.4 2 167 1 100 0 501 1 44 210 NBI65133.1 hypothetical protein [Clostridiales bacterium] diamond 1002 344 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium
27941055 27941055 PRJNA931595_P_NODE_14445_length_244_cov_1.438596_g14336_i0 PRJNA931595 14445 244 1.438596 3.51017424 Atopococcus tabaci 269774 Bacteria Bacteria 106 1.7e-24   NR WP_338157168.1 269774 g14336 i0 100 0.676229508196721 55 0 67.6 0 243 79 437 491 WP_338157168.1 DNA internalization-related competence protein ComEC/Rec2 [Atopococcus tabaci] diamond 165 106 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Atopococcus Atopococcus tabaci
29835365 29835365 PRJNA931595_P_NODE_12751_length_250_cov_0.870056_g12642_i0 PRJNA931595 12751 250 0.870056 2.17514 Lachnospiraceae bacterium 1898203 Bacteria Bacteria 42 0.0346   NR MBO4750473.1 1898203 g12642 i0 37.3 0.708 59 34 67.2 1 194 27 5 63 MBO4750473.1 DUF2752 domain-containing protein [Lachnospiraceae bacterium] diamond 177 42 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;