RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA931595" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA931595 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28130555 28130555 PRJNA931595_P_NODE_11705_length_256_cov_1.683060_g11596_i0 PRJNA931595 11705 256 1.68306 4.3086336 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 103 2.3399999999999994e-23   NR HXG55446.1 2910147 g11596 i0 60 0.99609375 85 34 99.6 0 2 256 354 438 HXG55446.1 hypothetical protein [Vicinamibacterales bacterium] diamond 255 103 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
28130556 28130556 PRJNA931595_P_NODE_13205_length_248_cov_0.880000_g13096_i0 PRJNA931595 13205 248 0.88 2.1824 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 72.8 9.77e-13   NR MEQ1764871.1 2283092 g13096 i0 76 1.19758064516129 50 10 60.5 1 248 99 398 445 MEQ1764871.1 ATP-binding protein [Pyrinomonadaceae bacterium] diamond 297 72.8 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29298695 29298695 PRJNA931595_P_NODE_13049_length_249_cov_0.875000_g12940_i0 PRJNA931595 13049 249 0.875 2.17875 Terriglobia bacterium 2081523 Bacteria Bacteria 59.3 5.59e-8   NR HVJ31753.1 2081523 g12940 i0 39.2 0.951807228915663 79 46 94 2 11 244 99 176 HVJ31753.1 GMC oxidoreductase [Terriglobia bacterium] diamond 237 59.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
29551060 29551060 PRJNA931595_P_NODE_12970_length_249_cov_0.875000_g12861_i0 PRJNA931595 12970 249 0.875 2.17875 Acidobacteriota bacterium 1978231 Bacteria Bacteria 52.8 1.55e-6   NR MDQ7008654.1 1978231 g12861 i0 87.1 0.903614457831325 31 4 37.3 0 248 156 74 104 MDQ7008654.1 hypothetical protein [Acidobacteriota bacterium] diamond 225 52.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30246339 30246339 PRJNA931595_P_NODE_5072_length_348_cov_1.225455_g4963_i0 PRJNA931595 5072 348 1.225455 4.2645834 Holophaga sp. 2582906 Bacteria Bacteria 43.9 0.0396   NR MDR3672614.1 2582906 g4963 i0 45.9 0.318965517241379 37 20 31.9 0 129 239 183 219 MDR3672614.1 phosphodiesterase [Holophaga sp.] diamond 111 43.9 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga Holophaga sp.
30656818 30656818 PRJNA931595_P_NODE_12073_length_252_cov_2.519553_g11964_i0 PRJNA931595 12073 252 2.519553 6.34927356 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.1 0.031   NR MDE2928207.1 1978231 g11964 i0 48.6 0.416666666666667 35 18 41.7 0 120 16 357 391 MDE2928207.1 hypothetical protein [Acidobacteriota bacterium] diamond 105 43.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30719961 30719961 PRJNA931595_P_NODE_12094_length_252_cov_1.916201_g11985_i0 PRJNA931595 12094 252 1.916201 4.82882652 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.1 0.0306   NR MBN9661815.1 1978231 g11985 i0 42.4 0.702380952380952 59 27 67.9 3 31 201 181 234 MBN9661815.1 hypothetical protein [Acidobacteriota bacterium] diamond 177 43.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31383881 31383881 PRJNA931595_P_NODE_11396_length_259_cov_2.182796_g11287_i0 PRJNA931595 11396 259 2.182796 5.65344164 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 50.1 1.11e-4   NR MFN3324050.1 2212468 g11287 i0 87.5 0.370656370656371 32 4 37.1 0 98 3 1 32 MFN3324050.1 MFS transporter [Bryobacteraceae bacterium] diamond 96 50.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
32837642 32837642 PRJNA931595_P_NODE_10220_length_270_cov_1.949239_g10111_i0 PRJNA931595 10220 270 1.949239 5.2629453 Bryobacterales bacterium 2026791 Bacteria Bacteria 42.7 0.0485   NR HUG81627.1 2026791 g10111 i0 38.7 0.688888888888889 62 28 66.7 3 68 247 299 352 HUG81627.1 glycosyltransferase [Bryobacterales bacterium] diamond 186 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;