RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA931595" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA931595 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27972543 27972543 PRJNA931595_P_NODE_4985_length_350_cov_2.036101_g4876_i0 PRJNA931595 4985 350 2.036101 7.1263535 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 73.2 5.87e-13   NR MES1919605.1 126728 g4876 i0 34.8 0.762857142857143 89 58 76.3 0 12 278 91 179 MES1919605.1 hypothetical protein [Bonamia ostreae] diamond 267 73.2 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
28541113 28541113 PRJNA931595_P_NODE_5207_length_344_cov_1.538745_g5098_i0 PRJNA931595 5207 344 1.538745 5.2932828 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 58.5 2.31e-7   NR MES1918110.1 126728 g5098 i0 52 0.436046511627907 50 24 43.6 0 344 195 153 202 MES1918110.1 hypothetical protein [Bonamia ostreae] diamond 150 58.5 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
28730355 28730355 PRJNA931595_P_NODE_14987_length_243_cov_0.905882_g14878_i0 PRJNA931595 14987 243 0.905882 2.20129326 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 87.4 1.17e-18   NR MES1918110.1 126728 g14878 i0 50.7 0.925925925925926 75 37 92.6 0 230 6 55 129 MES1918110.1 hypothetical protein [Bonamia ostreae] diamond 225 87.4 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;