RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA931595" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 4 ✖

bioproject 1

  • PRJNA931595 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27119500 27119500 PRJNA931595_P_NODE_14562_length_244_cov_0.900585_g14453_i0 PRJNA931595 14562 244 0.900585 2.1974274 Potamolinea sp. 3100419 Bacteria Bacteria 97.1 2.7100000000000004e-21   NR MFB8791851.1 3100419 g14453 i0 89.7 0.959016393442623 78 8 95.9 0 3 236 295 372 MFB8791851.1 serine/threonine-protein kinase [Potamolinea sp.] diamond 234 97.1 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Wilmottiaceae Potamolinea Potamolinea sp.
27695721 27695721 PRJNA931595_P_NODE_15584_length_241_cov_0.916667_g15475_i0 PRJNA931595 15584 241 0.916667 2.20916747 Coleofasciculales 3079753 Bacteria Bacteria 129 5.46e-35   NR MBD0361924.1 2768885 g15475 i0 84.4 2.86307053941909 77 12 95.9 0 2 232 195 271 MBD0361924.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase [Coleofasciculus sp. C3-bin4] diamond 690 130 0.992307692307692 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Coleofasciculaceae Coleofasciculus Coleofasciculus sp. C3-bin4
30972947 30972947 PRJNA931595_P_NODE_12714_length_250_cov_0.870056_g12605_i0 PRJNA931595 12714 250 0.870056 2.17514 Potamolinea sp. 3100419 Bacteria Bacteria 138 6.5899999999999994e-37   NR MFB8788898.1 3100419 g12605 i0 88 0.996 83 10 99.6 0 249 1 35 117 MFB8788898.1 MFS transporter [Potamolinea sp.] diamond 249 138 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Wilmottiaceae Potamolinea Potamolinea sp.
32396190 32396190 PRJNA931595_P_NODE_14979_length_243_cov_0.905882_g14870_i0 PRJNA931595 14979 243 0.905882 2.20129326 Potamolinea sp. 3100419 Bacteria Bacteria 63.9 1.26e-9   NR MFB8792605.1 3100419 g14870 i0 96.9 0.395061728395062 32 1 39.5 0 146 241 1 32 MFB8792605.1 preprotein translocase subunit SecA [Potamolinea sp.] diamond 96 63.9 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Wilmottiaceae Potamolinea Potamolinea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;