RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA930380" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA930380 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14937293 14937293 PRJNA930380_P_NODE_13712_length_243_cov_0.905882_g13659_i0 PRJNA930380 13712 243 0.905882 2.20129326 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 132 5.700000000000001e-34   NR MFO7292305.1 2080302 g13659 i0 100 0.864197530864197 70 0 86.4 0 3 212 217 286 MFO7292305.1 DivIVA domain-containing protein [Acidimicrobiia bacterium] diamond 210 132 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
16212250 16212250 PRJNA930380_P_NODE_12093_length_249_cov_0.875000_g12040_i0 PRJNA930380 12093 249 0.875 2.17875 Actinomycetota bacterium 2900548 Bacteria Bacteria 145 8.26e-40   NR HEU4866131.1 2900548 g12040 i0 98.7 1.83132530120482 76 1 91.6 0 21 248 1 76 HEU4866131.1 TrkA C-terminal domain-containing protein [Actinomycetota bacterium] diamond 456 145 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
26835202 26835202 PRJNA930380_P_NODE_6321_length_290_cov_1.244240_g6268_i0 PRJNA930380 6321 290 1.24424 3.608296 Kitasatospora sp. NPDC 1871188 Bacteria Bacteria 45.8 0.00422   NR WP_359821280.1 3154600 g6268 i0 40.9 0.682758620689655 66 31 60 2 41 214 58 123 WP_359821280.1 TOMM precursor leader peptide-binding protein [Kitasatospora sp. NPDC036755] diamond 198 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. NPDC036755
29014795 29014795 PRJNA930380_P_NODE_7408_length_285_cov_1.452830_g7355_i0 PRJNA930380 7408 285 1.45283 4.1405655 Candidatus Hakubella thermalkaliphila 2754717 Bacteria Bacteria 44.7 0.00847   NR GFP31743.1 2754717 g7355 i0 40.5 0.38947368421052603 37 22 38.9 0 47 157 143 179 GFP31743.1 hypothetical protein HKBW3S42_00050 [Candidatus Hakubella thermalkaliphila] diamond 111 44.7 1 Bacteria   Bacillati Actinomycetota   Candidatus Hakubellales Candidatus Hakubellaceae Candidatus Hakubella Candidatus Hakubella thermalkaliphila
31478833 31478833 PRJNA930380_P_NODE_14256_length_241_cov_0.916667_g14203_i0 PRJNA930380 14256 241 0.916667 2.20916747 Frankia sp. R82 2950553 Bacteria Bacteria 65.5 3.51e-10   NR WP_251734420.1 2950553 g14203 i0 52.2 1.71784232365145 69 28 84.6 2 240 37 435 499 WP_251734420.1 SMP-30/gluconolactonase/LRE family protein, partial [Frankia sp. R82] diamond 414 65.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. R82

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;