RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA930380" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA930380 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28162140 28162140 PRJNA930380_P_NODE_11705_length_250_cov_0.870056_g11652_i0 PRJNA930380 11705 250 0.870056 2.17514 Symbiodinium sp. KB8 230985 SAR_Eukaryotes SAR_Eukaryotes 67.4 6.58e-11   NR CAE7571224.1 230985 g11652 i0 42.2 0.996 83 47 99.6 1 249 1 17 98 CAE7571224.1 qmcA [Symbiodinium sp. KB8] diamond 249 67.4 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium sp. KB8
29867041 29867041 PRJNA930380_P_NODE_3291_length_354_cov_1.096085_g3238_i0 PRJNA930380 3291 354 1.096085 3.8801409 Hondaea fermentalgiana 2315210 SAR_Eukaryotes SAR_Eukaryotes 67 3.54e-10   NR GBG32155.1 2315210 g3238 i0 47.8 0.584745762711864 69 36 58.5 0 264 58 2 70 GBG32155.1 Protein sds23 [Hondaea fermentalgiana] diamond 207 67 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Hondaea Hondaea fermentalgiana
30316884 30316884 PRJNA930380_P_NODE_3892_length_329_cov_1.203125_g3839_i0 PRJNA930380 3892 329 1.203125 3.95828125 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 143 6.8e-40   NR KAI9989638.1 4787 g3839 i0 64.2 20.8723404255319 109 39 99.4 0 328 2 79 187 KAI9989638.1 hypothetical protein PInf_019923 [Phytophthora infestans] diamond 6867 144 0.993055555555556 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;