RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA929952" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929952 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26961480 26961480 PRJNA929952_P_NODE_2882_length_723_cov_3.785303_g2147_i0 PRJNA929952 2882 723 3.785303 27.36774069 Massilimicrobiota sp. An142 1965564 Bacteria Bacteria 44.3 0.0168   NR OUQ08064.1 1965564 g2147 i0 47.8 0.190871369294606 46 24 19.1 0 355 492 6 51 OUQ08064.1 hypothetical protein B5E87_14690 [Massilimicrobiota sp. An142] diamond 138 44.3 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massilimicrobiota Massilimicrobiota sp. An142
27277918 27277918 PRJNA929952_P_NODE_21063_length_193_cov_8.341463_g19769_i0 PRJNA929952 21063 193 8.341463 16.09902359 Clostridiales bacterium 1898207 Bacteria Bacteria 42.7 0.0196   NR NLE68665.1 1898207 g19769 i0 51.4 0.575129533678757 37 15 57.5 1 130 20 97 130 NLE68665.1 hypothetical protein [Clostridiales bacterium] diamond 111 42.7 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium
31953037 31953037 PRJNA929952_P_NODE_2897_length_721_cov_3.923410_g2147_i1 PRJNA929952 2897 721 3.92341 28.2877861 Massilimicrobiota sp. An142 1965564 Bacteria Bacteria 44.3 0.0167   NR OUQ08064.1 1965564 g2147 i1 47.8 0.191400832177531 46 24 19.1 0 369 232 6 51 OUQ08064.1 hypothetical protein B5E87_14690 [Massilimicrobiota sp. An142] diamond 138 44.3 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massilimicrobiota Massilimicrobiota sp. An142

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;