RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA929952" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929952 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27720425 27720425 PRJNA929952_P_NODE_7264_length_452_cov_2.390071_g6061_i0 PRJNA929952 7264 452 2.390071 10.80312092 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 70.1 4.38e-12   NR MDO5065892.1 2021380 g6061 i0 58.7 0.418141592920354 63 25 41.8 1 209 397 72 133 MDO5065892.1 nucleoside-diphosphate kinase [Propionibacteriaceae bacterium] diamond 189 70.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
28730340 28730340 PRJNA929952_P_NODE_22307_length_176_cov_3.251701_g21013_i0 PRJNA929952 22307 176 3.251701 5.72299376 uncultured Friedmanniella sp. 335381 Bacteria Bacteria 42 0.0147   NR WP_294691557.1 335381 g21013 i0 51.4 0.596590909090909 35 17 59.7 0 61 165 36 70 WP_294691557.1 RDD family protein [uncultured Friedmanniella sp.] diamond 105 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Friedmanniella uncultured Friedmanniella sp.
29993471 29993471 PRJNA929952_P_NODE_9451_length_382_cov_6.150142_g8176_i0 PRJNA929952 9451 382 6.150142 23.49354244 Cellulosimicrobium funkei 264251 Bacteria Bacteria 46.2 0.0106   NR NUL49506.1 264251 g8176 i0 38.7 0.486910994764398 62 36 48.7 2 186 371 1059 1118 NUL49506.1 hypothetical protein [Cellulosimicrobium funkei] diamond 186 46.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium funkei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;