RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA929952" and tax_kingdom = "Viridiplantae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Viridiplantae · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA929952 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
909191 909191 PRJNA929952_P_NODE_301_length_1654_cov_3.419077_g181_i1 PRJNA929952 301 1654 3.419077 56.55153358 Axonopus compressus 217170 Plants Plants 814 4.05e-294   NR QJD54296.1 217170 g181 i1 88.6 0.845223700120919 466 33 80.9 1 1563 226 1 466 QJD54296.1 elongation factor 1-alpha [Axonopus compressus] diamond 1398 814 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Axonopus Axonopus compressus
3460043 3460043 PRJNA929952_P_NODE_2123_length_817_cov_3.953046_g1533_i0 PRJNA929952 2123 817 3.953046 32.29638582 Hordeum vulgare subsp. vulgare 112509 Plants Plants 249 1.19e-78   NR BAK00797.1 112509 g1533 i0 51.4 0.951040391676867 259 115 92.9 5 35 793 8 261 BAK00797.1 predicted protein [Hordeum vulgare subsp. vulgare] diamond 777 249 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
28169051 28169051 PRJNA929952_P_NODE_20185_length_207_cov_4.786517_g18891_i0 PRJNA929952 20185 207 4.786517 9.90809019 root 1 Root_unresolved Root_unresolved 42 0.0416   NR EOA18611.1 81985 g18891 i0 38.5 1.23188405797101 39 24 56.5 0 2 118 232 270 EOA18611.1 hypothetical protein CARUB_v10007184mg [Capsella rubella] diamond 255 42 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Capsella Capsella rubella
28698935 28698935 PRJNA929952_P_NODE_9327_length_385_cov_15.775281_g8053_i0 PRJNA929952 9327 385 15.775281 60.73483185 Ceratodon purpureus 3225 Plants Plants 43.5 0.0117   NR KAG0504195.1 3225 g8053 i0 56.4 0.303896103896104 39 17 30.4 0 121 5 38 76 KAG0504195.1 hypothetical protein KC19_N006800 [Ceratodon purpureus] diamond 117 43.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Pseudoditrichales Ditrichaceae Ceratodon Ceratodon purpureus
28919586 28919586 PRJNA929952_P_NODE_14908_length_268_cov_9.602510_g13614_i0 PRJNA929952 14908 268 9.60251 25.7347268 Prunus brigantina 151428 Plants Plants 48.9 7.86e-5   NR CAL8988860.1 151428 g13614 i0 34.8 0.996268656716418 89 39 99.6 1 268 2 33 102 CAL8988860.1 unnamed protein product, partial [Prunus brigantina] diamond 267 48.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus brigantina
29551049 29551049 PRJNA929952_P_NODE_22850_length_170_cov_3.113475_g21556_i0 PRJNA929952 22850 170 3.113475 5.2929075 Capsicum baccatum 33114 Plants Plants 47.8 2.36e-4   NR PHT25568.1 33114 g21556 i0 58.8 1.2 34 14 60 0 139 38 447 480 PHT25568.1 hypothetical protein CQW23_34807 [Capsicum baccatum] diamond 204 47.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum baccatum
32238178 32238178 PRJNA929952_P_NODE_22358_length_176_cov_1.789116_g21064_i0 PRJNA929952 22358 176 1.789116 3.14884416 Hordeum vulgare subsp. vulgare 112509 Plants Plants 56.2 2.64e-7   NR BAK02651.1 112509 g21064 i0 61.5 0.664772727272727 39 15 66.5 0 56 172 565 603 BAK02651.1 predicted protein [Hordeum vulgare subsp. vulgare] diamond 117 56.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;