RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA929940" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929940 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27656975 27656975 PRJNA929940_S_NODE_22604_length_218_cov_2.425414_g22369_i0 PRJNA929940 22604 218 2.425414 5.28740252 Streptomyces sp. NBC_ 1931 Bacteria Bacteria 43.1 0.0199   NR WP_327288926.1 2903769 g22369 i0 39.6 0.729357798165138 53 27 72.9 1 205 47 225 272 WP_327288926.1 S9 family peptidase [Streptomyces sp. NBC_01198] diamond 159 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBC_01198
28137632 28137632 PRJNA929940_S_NODE_7645_length_328_cov_3.154639_g7410_i0 PRJNA929940 7645 328 3.154639 10.34721592 Bacteria 2 Bacteria Bacteria 44.3 0.0227   NR WP_409923725.1 1967498 g7410 i0 26.5 1.85670731707317 102 64 89.6 2 308 15 138 232 WP_409923725.1 GntR family transcriptional regulator [Ilumatobacter sp.] diamond 609 44.7 0.991051454138702 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae Ilumatobacter Ilumatobacter sp.
29456184 29456184 PRJNA929940_S_NODE_57510_length_152_cov_1.426087_g57275_i0 PRJNA929940 57510 152 1.426087 2.16765224 Actinomycetota bacterium 2900548 Bacteria Bacteria 55.8 2.52e-7   NR MFM8237608.1 2900548 g57275 i0 92.3 4.55921052631579 26 2 51.3 0 152 75 27 52 MFM8237608.1 adenosylhomocysteinase [Actinomycetota bacterium] diamond 693 55.8 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;